CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cdx2.L *(Xenopus laevis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00046 (Homeobox)	IPR001356	XB-GENE-864967	T230642_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.855	0.947
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.855	0.947
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.855	0.947
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.855	0.947
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.855	0.947
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.855	0.947
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.855	0.947
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.855	0.947
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.855	0.947
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.855	0.947
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.855	0.930
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.855	0.930
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.855	0.912
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.855	0.912
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.855	0.912
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.855	0.912
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.855	0.912
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.855	0.912
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.855	0.912
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.855	0.912
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.850	0.912
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.850	0.912
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.850	0.912
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.840	0.860
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.840	0.860
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.840	0.860
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.840	0.860
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.840	0.860
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.840	0.860
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.840	0.860
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.840	0.860
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.840	0.860
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.840	0.860
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.840	0.860
Q70LF3_ARTSF M02211_2.00	Artemia franciscana	BTAATTAB	VTAATTAV	PBM Weirauch et al.(2014) pTH5553	0.834	0.877
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.819	0.895
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.819	0.877
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.819	0.877
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.819	0.877
pal-1 M02183_2.00	Caenorhabditis elegans	GYAATWAA	TTWATTRC	PBM Weirauch et al.(2014) pTH6016	0.650	0.684
Q9GP48_9TURB M02217_2.00	Discocelis tigrina	DTAATTAB	VTAATTAH	PBM Weirauch et al.(2014) pTH6515	0.641	0.719
Q24782_9CNID M02206_2.00	Eleutheria dichotoma	TTAATTAA	TTAATTAA	PBM Weirauch et al.(2014) pTH5486	0.613	0.561
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AAI11474	Homeodomain	154	210	DKYRVVYTDQQRLELEKEFHYSRYITIRRKAELAVGLGLSERQVKIWFQNRRAKERK

Links
Other Homeodomain family TFs
Other *Xenopus laevis* TFs

316 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
scro	Drosophila melanogaster	FBgn0028993	D	0.000
PXEA_0001880101	Protopolystoma xenopodis	PXEA_0001880101	I	0.000
Obox7	Mus musculus	ENSMUSG00000055942	I	0.000
ANCDUO_00781	Ancylostoma duodenale	ANCDUO_00781	I	0.000
ANCCEY_03060	Ancylostoma ceylanicum	ANCCEY_03060	I	0.000
Cmyd_10016952	Chelonia mydas	Cmyd_10016952	I	0.000
SPER_0000113901	Spirometra erinaceieuropaei	SPER_0000113901	N	0.000
MhA1_Contig864.frz3.gene5	Meloidogyne hapla	MhA1_Contig864.frz3.gene5	N	0.000
PXEA_0001780701	Protopolystoma xenopodis	PXEA_0001780701	N	0.000
PXEA_0002877701	Protopolystoma xenopodis	PXEA_0002877701	N	0.000
SBAD_0000181501	Soboliphyme baturini	SBAD_0000181501	N	0.000
SCUD_0001375201	Schistosoma curassoni	SCUD_0001375201	N	0.000
SCUD_0001462201	Schistosoma curassoni	SCUD_0001462201	N	0.000
SMRZ_0000101501	Schistosoma margrebowiei	SMRZ_0000101501	N	0.000
SMTD_0000532701	Schistosoma mattheei	SMTD_0000532701	N	0.000
SMTD_0001176901	Schistosoma mattheei	SMTD_0001176901	N	0.000
SMTD_0001311201	Schistosoma mattheei	SMTD_0001311201	N	0.000
L893_g32186	Steinernema glaseri	L893_g32186	N	0.000
SPER_0000700401	Spirometra erinaceieuropaei	SPER_0000700401	N	0.000
SROB_0001175701	Schistosoma rodhaini	SROB_0001175701	N	0.000
T265_03375	Opisthorchis viverrini	T265_03375	N	0.000
TASK_0001026901	Taenia asiatica	TASK_0001026901	N	0.000
TCNE_0000690601	Toxocara canis	TCNE_0000690601	N	0.000
TRE_0001513201	Trichobilharzia regenti	TRE_0001513201	N	0.000
TsM_000433500	Taenia solium	TsM_000433500	N	0.000
TsM_000683500	Taenia solium	TsM_000683500	N	0.000
TsM_001091900	Taenia solium	TsM_001091900	N	0.000
Sjc_0057900	Schistosoma japonicum	Sjc_0057900	N	0.000
CGI_10013606	Crassostrea gigas	CGI_10013606	N	0.000
EFV59996	Trichinella spiralis	EFV59996	N	0.000
EFV60006	Trichinella spiralis	EFV60006	N	0.000
GD19379	Drosophila simulans	FBgn0085026	N	0.000
PHUM317730	Pediculus humanus	PHUM317730	N	0.000
SINV19440	Solenopsis invicta	SINV19440	N	0.000
SINV24463	Solenopsis invicta	SINV24463	N	0.000
Smp_030050	Schistosoma mansoni	Smp_030050	N	0.000
Cflo_11771--XP_392872.2_APIME	Camponotus floridanus	Cflo_11771--XP_392872.2_APIME	N	0.000
CLEC007188	Cimex lectularius	CLEC007188	N	0.000
MhA1_Contig1584.frz3.gene20	Meloidogyne hapla	MhA1_Contig1584.frz3.gene20	N	0.000
SMU15032406	Schmidtea mediterranea	SMU15032406	N	0.000
AALB003620	Anopheles albimanus	AALB003620	N	0.000
ASTEI04298	Anopheles stephensi	ASTEI04298	N	0.000
BGLB001559	Biomphalaria glabrata	BGLB001559	N	0.000
D915_09342	Fasciola hepatica	D915_09342	N	0.000
DILT_0000804401	Diphyllobothrium latum	DILT_0000804401	N	0.000
HDID_0000158701	Hymenolepis diminuta	HDID_0000158701	N	0.000
ACEP10474	Atta cephalotes	ACEP10474	N	0.000
L893_g8818	Steinernema glaseri	L893_g8818	N	0.000

cdx2.L (Xenopus laevis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

316 Related TFs

cdx2.L **(Xenopus laevis)
Homeodomain**