PXEA_0003190801 (Protopolystoma xenopodis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 PXEA_0003190801 T235816_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx3-1
M00170_2.00 		Mus musculus
NDAAGTRBNN
NNVYACTTHN		 PBM
Badis et al.(2009)
Nkx3-1_2923 		0.813 0.807
Nkx3-1
M00420_2.00 		Mus musculus
NNAAGTRBNN
NNVYACTTNN		 PBM
Berger et al.(2008)
Nkx3-1_2923 		0.813 0.807
NKX3-1
M05255_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_HT-SELEX 		0.813 0.807
NKX3-1
M09154_2.00 		Homo sapiens
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_HUMAN.H11MO.0.C 		0.813 0.807
Nkx3-1
M09184_2.00 		Mus musculus
NYDAAGTGBYWD
HWRVCACTTHRN		 Misc
Kulakovskiy et al.(2013)
NKX31_MOUSE.H11MO.0.C 		0.813 0.807
NKX3-1
M09559_2.00 		Homo sapiens
BTRAGTRBYY
RRVYACTYAV		 Misc
Heinz et al.(2010)
LNCaP-Nkx3.1_GSE28264 		0.813 0.807
NKX3-1
M10729_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_01 		0.813 0.807
NKX3-1
M10730_2.00 		Homo sapiens
NWWTAAGTATWH
DWATACTTAWWN		 Transfac
Matys et al.(2006)
V$NKX3A_01 		0.813 0.807
NKX3-1
M10731_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX3A_Q3 		0.813 0.807
NKX3-1
M05256_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_1 		0.813 0.807
NKX3-1
M05257_2.00 		Homo sapiens
NTAAYSWB
VWSRTTAN		 SELEX
Yin et al.(2017)
NKX3-1_eDBD_Methyl-HT-SELEX_2 		0.813 0.807
Nkx3-2
M00506_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Bapx1_2343 		0.809 0.860
NKX3-2
M05012_2.00 		Homo sapiens
NNTAAGTGSN
NSCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_HT-SELEX 		0.809 0.860
NKX3-2
M09138_2.00 		Homo sapiens
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_HUMAN.H11MO.0.C 		0.809 0.860
Nkx3-2
M09212_2.00 		Mus musculus
TTAAGTGBNH
DNVCACTTAA		 Misc
Kulakovskiy et al.(2013)
NKX32_MOUSE.H11MO.0.B 		0.809 0.860
NKX3-2
M10663_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX32_01 		0.809 0.860
NKX3-2
M05013_2.00 		Homo sapiens
NNTAAGTGBN
NVCACTTANN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_1 		0.809 0.860
NKX3-2
M05014_2.00 		Homo sapiens
NTAACGHB
VDCGTTAN		 SELEX
Yin et al.(2017)
NKX3-2_eDBD_Methyl-HT-SELEX_2 		0.809 0.860
bap
M00560_2.00 		Drosophila melanogaster
NDAAGTRBNN
NNVYACTTHN		 PBM
Busser et al.(2012a)
Bap 		0.807 0.842
bap
M02119_2.00 		Drosophila melanogaster
NYTAAGTRSNN
NNSYACTTARN		 PBM
Weirauch et al.(2014)
pTH5945 		0.807 0.842
bap
M03812_2.00 		Drosophila melanogaster
NNTAAGTGBN
NVCACTTANN		 SELEX
Nitta et al.(2015)
bap_1 		0.807 0.842
bap
M06504_2.00 		Drosophila melanogaster
TTAAGTR
YACTTAA		 B1H
Mathelier et al.(2014)
MA0211.1 		0.807 0.842
bap
M06287_2.00 		Drosophila melanogaster
NBTTAAGTRN
NYACTTAAVN		 B1H
Zhu et al.(2011)
Bap_Cell_FBgn0004862 		0.807 0.842
bap
M06288_2.00 		Drosophila melanogaster
NYTAAKTR
YAMTTARN		 B1H
Zhu et al.(2011)
Bap_SOLEXA_FBgn0004862 		0.807 0.842
ENSCING00000007395
M02076_2.00 		Ciona intestinalis
NNNDWNWR
YWNWHNNN		 PBM
Weirauch et al.(2014)
pTH5922 		0.805 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0003190801-mRNA-1 Homeodomain 345 401

Links

Other Homeodomain family TFs
Other Protopolystoma xenopodis TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCING00000007395 Ciona intestinalis ENSCING00000007395 D 0.805
NKX3-2 Homo sapiens ENSG00000109705 D 0.809
NKX3-1 Homo sapiens ENSG00000167034 D 0.813
Nkx3-1 Mus musculus ENSMUSG00000022061 D 0.813
Nkx3-2 Mus musculus ENSMUSG00000049691 D 0.809
bap Drosophila melanogaster FBgn0004862 D 0.807
CpipJ_CPIJ004109 Culex pipiens CpipJ_CPIJ004109 I 0.812
WUBG_10043 Wuchereria bancrofti WUBG_10043 I 0.603
AAEL006597 Aedes aegypti AAEL006597 I 0.812
ACEP23863 Atta cephalotes ACEP23863 I 0.803
ACYPI002893 Acyrthosiphon pisum ACYPI002893 I 0.814
ADAC003526 Anopheles darlingi ADAC003526 I 0.812
AGAP003671 Anopheles gambiae AGAP003671 I 0.812
BGIBMGA010706 Bombyx mori BGIBMGA010706 I 0.812
CapteG79432 Capitella teleta CapteG79432 I 0.819
CGI_10023919 Crassostrea gigas CGI_10023919 I 0.809
CPIJ004109 Culex quinquefasciatus CPIJ004109 I 0.812
ENSACAG00000026683 Anolis carolinensis ENSACAG00000026683 I 0.813
ENSAMEG00000002866 Ailuropoda melanoleuca ENSAMEG00000002866 I 0.813
ENSAMEG00000009342 Ailuropoda melanoleuca ENSAMEG00000009342 I 0.809
ENSAMXG00000002250 Astyanax mexicanus ENSAMXG00000002250 I 0.808
ENSAMXG00000003840 Astyanax mexicanus ENSAMXG00000003840 I 0.809
ENSAMXG00000009415 Astyanax mexicanus ENSAMXG00000009415 I 0.659
ENSAMXG00000024837 Astyanax mexicanus ENSAMXG00000024837 I 0.811
ENSAPLG00000014690 Anas platyrhynchos ENSAPLG00000014690 I 0.811
NKX3-1 Bos taurus ENSBTAG00000001221 I 0.813
NKX3-2 Bos taurus ENSBTAG00000010896 I 0.809
ENSCAFG00000009107 Canis familiaris ENSCAFG00000009107 I 0.813
NKX3-2 Canis familiaris ENSCAFG00000015412 I 0.809
ENSCHOG00000011132 Choloepus hoffmanni ENSCHOG00000011132 I 0.813
NKX3-2 Callithrix jacchus ENSCJAG00000012159 I 0.809
NKX3-1 Callithrix jacchus ENSCJAG00000020092 I 0.813
NKX3-2 Cavia porcellus ENSCPOG00000005449 I 0.809
ENSCPOG00000010557 Cavia porcellus ENSCPOG00000010557 I 0.813
ENSCSAG00000016229 Chlorocebus sabaeus ENSCSAG00000016229 I 0.813
ENSCSAG00000016338 Chlorocebus sabaeus ENSCSAG00000016338 I 0.809
nkx3.2 Danio rerio ENSDARG00000037639 I 0.809
nkx3.3 Danio rerio ENSDARG00000069327 I 0.808
nkx3-1 Danio rerio ENSDARG00000078280 I 0.816
NKX3-2 Dasypus novemcinctus ENSDNOG00000043074 I 0.809
NKX3-1 Dasypus novemcinctus ENSDNOG00000044451 I 0.813
ENSECAG00000001509 Equus caballus ENSECAG00000001509 I 0.813
NKX3-1 Erinaceus europaeus ENSEEUG00000001113 I 0.813
ENSEEUG00000012691 Erinaceus europaeus ENSEEUG00000012691 I 0.809
NKX3-1 Echinops telfairi ENSETEG00000018790 I 0.813
ENSFALG00000011121 Ficedula albicollis ENSFALG00000011121 I 0.811
nkx3.3 Gasterosteus aculeatus ENSGACG00000007573 I 0.806
nkx3-1 Gasterosteus aculeatus ENSGACG00000010776 I 0.811
nkx3.2 Gasterosteus aculeatus ENSGACG00000016378 I 0.809
NKX3-2 Gorilla gorilla ENSGGOG00000008589 I 0.809
NKX3-1 Gorilla gorilla ENSGGOG00000014369 I 0.813
ENSGMOG00000005518 Gadus morhua ENSGMOG00000005518 I 0.811
ENSGMOG00000018725 Gadus morhua ENSGMOG00000018725 I 0.809
ENSLACG00000003608 Latimeria chalumnae ENSLACG00000003608 I 0.809
ENSLACG00000012763 Latimeria chalumnae ENSLACG00000012763 I 0.808
NKX3-1 Loxodonta africana ENSLAFG00000008941 I 0.813
NKX3-2 Loxodonta africana ENSLAFG00000031404 I 0.809
ENSLOCG00000009031 Lepisosteus oculatus ENSLOCG00000009031 I 0.808
ENSLOCG00000009892 Lepisosteus oculatus ENSLOCG00000009892 I 0.809
ENSLOCG00000015015 Lepisosteus oculatus ENSLOCG00000015015 I 0.811
ENSMICG00000000190 Microcebus murinus ENSMICG00000000190 I 0.809
NKX3-1 Microcebus murinus ENSMICG00000011189 I 0.813
NKX3-1 Myotis lucifugus ENSMLUG00000006118 I 0.813
NKX3-2 Myotis lucifugus ENSMLUG00000008362 I 0.809
NKX3-1 Macaca mulatta ENSMMUG00000009796 I 0.813
ENSMMUG00000022026 Macaca mulatta ENSMMUG00000022026 I 0.809
NKX3-1 Monodelphis domestica ENSMODG00000016789 I 0.813
NKX3-2 Monodelphis domestica ENSMODG00000024753 I 0.809
ENSMPUG00000000476 Mustela putorius furo ENSMPUG00000000476 I 0.809
ENSMPUG00000003418 Mustela putorius furo ENSMPUG00000003418 I 0.813
ENSNLEG00000015968 Nomascus leucogenys ENSNLEG00000015968 I 0.813
ENSNLEG00000016256 Nomascus leucogenys ENSNLEG00000016256 I 0.809
NKX3-1 Ornithorhynchus anatinus ENSOANG00000008027 I 0.813
ENSOARG00000010071 Ovis aries ENSOARG00000010071 I 0.813
NKX3-1 Oryctolagus cuniculus ENSOCUG00000004294 I 0.813
NKX3-2 Oryctolagus cuniculus ENSOCUG00000009039 I 0.809
NKX3-1 Otolemur garnettii ENSOGAG00000001303 I 0.813
NKX3-2 Otolemur garnettii ENSOGAG00000015615 I 0.809
ENSONIG00000000279 Oreochromis niloticus ENSONIG00000000279 I 0.600
ENSONIG00000002379 Oreochromis niloticus ENSONIG00000002379 I 0.809
ENSONIG00000011762 Oreochromis niloticus ENSONIG00000011762 I 0.811
ENSONIG00000018347 Oreochromis niloticus ENSONIG00000018347 I 0.670
NKX3-1 Ochotona princeps ENSOPRG00000003179 I 0.813
ENSOPRG00000005452 Ochotona princeps ENSOPRG00000005452 I 0.809
nkx3.2 Oryzias latipes ENSORLG00000000593 I 0.809
ENSORLG00000007716 Oryzias latipes ENSORLG00000007716 I 0.808
nkx3-1 Oryzias latipes ENSORLG00000010925 I 0.811
ENSPANG00000004934 Papio anubis ENSPANG00000004934 I 0.813
ENSPANG00000021310 Papio anubis ENSPANG00000021310 I 0.809
NKX3-2 Procavia capensis ENSPCAG00000013077 I 0.809
ENSPCAG00000016644 Procavia capensis ENSPCAG00000016644 I 0.813
ENSPFOG00000002882 Poecilia formosa ENSPFOG00000002882 I 0.809
ENSPFOG00000009440 Poecilia formosa ENSPFOG00000009440 I 0.600
ENSPFOG00000009654 Poecilia formosa ENSPFOG00000009654 I 0.811
ENSPFOG00000020885 Poecilia formosa ENSPFOG00000020885 I 0.808
ENSPPYG00000014611 Pongo abelii ENSPPYG00000014611 I 0.809
ENSPPYG00000018442 Pongo abelii ENSPPYG00000018442 I 0.813
ENSPSIG00000012169 Pelodiscus sinensis ENSPSIG00000012169 I 0.809
ENSPSIG00000017342 Pelodiscus sinensis ENSPSIG00000017342 I 0.813
NKX3-1 Pan troglodytes ENSPTRG00000020081 I 0.813
ENSPTRG00000031253 Pan troglodytes ENSPTRG00000031253 I 0.809
NKX3-2 Pteropus vampyrus ENSPVAG00000002830 I 0.809
NKX3-1 Pteropus vampyrus ENSPVAG00000005378 I 0.813
Nkx3-1 Rattus norvegicus ENSRNOG00000015477 I 0.813
Nkx3-2 Rattus norvegicus ENSRNOG00000060782 I 0.809
ENSSARG00000001895 Sorex araneus ENSSARG00000001895 I 0.813
ENSSHAG00000015475 Sarcophilus harrisii ENSSHAG00000015475 I 0.813
ENSSSCG00000024594 Sus scrofa ENSSSCG00000024594 I 0.809
ENSSSCG00000028216 Sus scrofa ENSSSCG00000028216 I 0.813
ENSSTOG00000021803 Ictidomys tridecemlineatus ENSSTOG00000021803 I 0.809
ENSTBEG00000002319 Tupaia belangeri ENSTBEG00000002319 I 0.813
nkx3.2 Tetraodon nigroviridis ENSTNIG00000015732 I 0.809
NKX2-3 Takifugu rubripes ENSTRUG00000002729 I 0.600
NKX2-3 Takifugu rubripes ENSTRUG00000003800 I 0.600
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.809
ENSTSYG00000007109 Tarsius syrichta ENSTSYG00000007109 I 0.813
ENSTTRG00000003623 Tursiops truncatus ENSTTRG00000003623 I 0.809
ENSTTRG00000012332 Tursiops truncatus ENSTTRG00000012332 I 0.675
NKX3-1 Vicugna pacos ENSVPAG00000004503 I 0.813
ENSXMAG00000005680 Xiphophorus maculatus ENSXMAG00000005680 I 0.600
ENSXMAG00000016282 Xiphophorus maculatus ENSXMAG00000016282 I 0.809
ENSXMAG00000020095 Xiphophorus maculatus ENSXMAG00000020095 I 0.808
ENSXMAG00000020262 Xiphophorus maculatus ENSXMAG00000020262 I 0.811
bap Drosophila simulans FBgn0067504 I 0.807
bap Drosophila sechellia FBgn0067536 I 0.807
GA20672 Drosophila pseudoobscura FBgn0080666 I 0.807
GF18600 Drosophila ananassae FBgn0095618 I 0.807
GG24598 Drosophila erecta FBgn0116730 I 0.807
GH22032 Drosophila grimshawi FBgn0129493 I 0.807
GI21951 Drosophila mojavensis FBgn0144680 I 0.807
GL27337 Drosophila persimilis FBgn0164918 I 0.807
GJ14311 Drosophila virilis FBgn0201526 I 0.807
GK14503 Drosophila willistoni FBgn0216509 I 0.807
GE25732 Drosophila yakuba FBgn0242790 I 0.807
GB47401 Apis mellifera GB47401 I 0.803
HelroG138724 Helobdella robusta HelroG138724 I 0.655
HelroG148616 Helobdella robusta HelroG148616 I 0.810
HMEL006181 Heliconius melpomene HMEL006181 I 0.812
ISCW014989 Ixodes scapularis ISCW014989 I 0.808
KGM_11246 Danaus plexippus KGM_11246 I 0.812
LotgiG60615 Lottia gigantea LotgiG60615 I 0.795
MCINX004875 Melitaea cinxia MCINX004875 I 0.812
MESCA006298 Megaselia scalaris MESCA006298 I 0.812
NEMVEDRAFT_v1g208034 Nematostella vectensis NEMVEDRAFT_v1g208034 I 0.805
NV25828 Nasonia vitripennis NV25828 I 0.803
PHUM439840 Pediculus humanus PHUM439840 I 0.812
RPRC001122 Rhodnius prolixus RPRC001122 I 0.812
SINV22315 Solenopsis invicta SINV22315 I 0.803
SMAR005030 Strigamia maritima SMAR005030 I 0.809
Smp_140730 Schistosoma mansoni Smp_140730 I 0.846
SPU_013047 Strongylocentrotus purpuratus SPU_013047 I 0.809
TC012743 Tribolium castaneum TC012743 I 0.799
tetur04g08350 Tetranychus urticae tetur04g08350 I 0.811
YQE_10102 Dendroctonus ponderosae YQE_10102 I 0.799
Aan_R009530 Calypte anna Aan_R009530 I 0.702
Alligator_sinensis_CCG000534.1 Alligator sinensis Alligator_sinensis_CCG000534.1 I 0.809
ENSBTAP00000001615-D1 Bos grunniens ENSBTAP00000001615-D1 I 0.813
ENSP00000370253 Macaca fascicularis ENSP00000370253 I 0.813
ENSP00000371875 Macaca fascicularis ENSP00000371875 I 0.793
Hsal_06436--XP_001120208.1_APIME Harpegnathos saltator Hsal_06436--XP_001120208.1_APIME I 0.803
Myotis_brandtii_NKX3_10014306 Myotis brandtii Myotis_brandtii_NKX3_10014306 I 0.813
Pvit_15821 Pogona vitticeps Pvit_15821 I 0.809
estExt_fgenesh2_pg.C_1430013 Branchiostoma floridae estExt_fgenesh2_pg.C_1430013 I 0.809
Ocbimv22026957m.g Octopus bimaculoides Ocbimv22026957m.g I 0.821
Sakowv30040088m.g Saccoglossus kowalevskii Sakowv30040088m.g I 0.809
CLEC002956 Cimex lectularius CLEC002956 I 0.812
LCUP000733 Lucilia cuprina LCUP000733 I 0.812
LDEC009723 Leptinotarsa decemlineata LDEC009723 I 0.799
SMU15003549 Schmidtea mediterranea SMU15003549 I 0.833
SMU15038706 Schmidtea mediterranea SMU15038706 I 0.600
nkx3-1.L Xenopus laevis XB-GENE-479031 I 0.813
nkx3-3 Xenopus tropicalis XB-GENE-479908 I 0.808
nkx3-1.S Xenopus laevis XB-GENE-6252708 I 0.813
nkx3-3.S Xenopus laevis XB-GENE-865322 I 0.808
nkx3-2 Xenopus tropicalis XB-GENE-876834 I 0.809
nkx3-2.S Xenopus laevis XB-GENE-876836 I 0.809
XP_002932598 Xenopus tropicalis XP_002932598 I 0.813
AARA010121 Anopheles arabiensis AARA010121 I 0.812
AATE016309 Anopheles atroparvus AATE016309 I 0.812
ACHR006588 Anopheles christyi ACHR006588 I 0.812
ACOM028774 Anopheles coluzzii ACOM028774 I 0.812
ACUA019412 Anopheles culicifacies ACUA019412 I 0.812
ADIR005347 Anopheles dirus ADIR005347 I 0.812
AEPI001627 Anopheles epiroticus AEPI001627 I 0.812
AFAF013479 Anopheles farauti AFAF013479 I 0.812
AFUN008966 Anopheles funestus AFUN008966 I 0.812
AMAM011860 Anopheles maculatus AMAM011860 I 0.812
AMEC017317 Anopheles melas AMEC017317 I 0.812
AMEM005009 Anopheles merus AMEM005009 I 0.812
AMIN004031 Anopheles minimus AMIN004031 I 0.812
AQUA001538 Anopheles quadriannulatus AQUA001538 I 0.812
ASIS007650 Anopheles sinensis ASIS007650 I 0.812
ASTEI07437 Anopheles stephensi ASTEI07437 I 0.812
BGLB010692 Biomphalaria glabrata BGLB010692 I 0.817
MDOA010758 Musca domestica MDOA010758 I 0.812
PPAI010327 Phlebotomus papatasi PPAI010327 I 0.812
A_02450 Schistosoma haematobium A_02450 I 0.846
A_06201 Schistosoma haematobium A_06201 I 0.608
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.624
BTMF_0000772101 Brugia timori BTMF_0000772101 I 0.603
BXY_0622200 Bursaphelenchus xylophilus BXY_0622200 I 0.603
csin109461 Clonorchis sinensis csin109461 I 0.848
D915_02578 Fasciola hepatica D915_02578 I 0.735
D918_06873 Trichuris suis D918_06873 I 0.616
ECANG7_00763 Echinococcus canadensis ECANG7_00763 I 0.662
EmuJ_000895600 Echinococcus multilocularis EmuJ_000895600 I 0.662
HmN_000028800 Hymenolepis microstoma HmN_000028800 I 0.613
HNAJ_0001184001 Hymenolepis nana HNAJ_0001184001 I 0.613
L893_g18140 Steinernema glaseri L893_g18140 I 0.650
MCOS_0000074801 Mesocestoides corti MCOS_0000074801 I 0.654
nLs.2.1.2.g07743 Litomosoides sigmodontis nLs.2.1.2.g07743 I 0.601
SMRZ_0000016501 Schistosoma margrebowiei SMRZ_0000016501 I 0.846
SMTD_0000549701 Schistosoma mattheei SMTD_0000549701 I 0.846
TASK_0000475201 Taenia asiatica TASK_0000475201 I 0.662
TCLT_0000478201 Thelazia callipaeda TCLT_0000478201 I 0.738
TsM_000540100 Taenia solium TsM_000540100 I 0.662
TTAC_0000184701 Hydatigera taeniaeformis TTAC_0000184701 I 0.662
TTRE_0000463801 Trichuris trichiura TTRE_0000463801 I 0.616
SMU15030938 Schmidtea mediterranea SMU15030938 N 0.387
HDID_0000431201 Hymenolepis diminuta HDID_0000431201 N 0.618