SROB_0001854701 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0001854701 T236425_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pdm3
M02127_2.00 		Drosophila melanogaster
CTAATTAN
NTAATTAG		 PBM
Weirauch et al.(2014)
pTH6769 		0.631 0.482
POU6F1
M02094_2.00 		Homo sapiens
VNTAATTANB
VNTAATTANB		 PBM
Weirauch et al.(2014)
pTH6519 		0.603 0.482
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0001854701-mRNA-1 Homeodomain 40 95

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
abi4 Zea mays GRMZM2G093595 D 0.000
Gorai.011G291900 Gossypium raimondii Gorai.011G291900 I 0.000
ABI4 Vitis vinifera VIT_13s0067g01400 I 0.000
Ca_12465 Cicer arietinum Ca_12465 I 0.000
Cla006708 Citrullus lanatus Cla006708 I 0.000
Pm018953 Prunus mume Pm018953 I 0.000
29814.m000739 Ricinus communis 29814.m000739 I 0.000
cassava20838.m1 Manihot esculenta cassava20838.m1 I 0.000
cassava41265.m1 Manihot esculenta cassava41265.m1 I 0.000
mgf024416m Mimulus guttatus mgf024416m I 0.000
Bostr.23794s0036 Boechera stricta Bostr.23794s0036 I 0.000
Cagra.7053s0005 Capsella grandiflora Cagra.7053s0005 I 0.000
Carubv10025253m.g Capsella rubella Carubv10025253m.g I 0.000
Ciclev10033578m.g Citrus clementina Ciclev10033578m.g I 0.000
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.000
gene21003-v1.0-hybrid Fragaria vesca gene21003-v1.0-hybrid I 0.000
SELMODRAFT_427925 Selaginella moellendorffii SELMODRAFT_427925 I 0.000
Lus10009834.g Linum usitatissimum Lus10009834.g I 0.000
Lus10040944.g Linum usitatissimum Lus10040944.g I 0.000
MDP0000225376 Malus domestica MDP0000225376 I 0.000
MDP0000628484 Malus domestica MDP0000628484 I 0.000
orange1.1g038194m.g Citrus sinensis orange1.1g038194m.g I 0.000
Pavir.J29572 Panicum virgatum Pavir.J29572 I 0.000
Pavir.J33237 Panicum virgatum Pavir.J33237 I 0.000
Pavir.J38620 Panicum virgatum Pavir.J38620 I 0.000
SapurV1A.0061s0480 Salix purpurea SapurV1A.0061s0480 I 0.000
SapurV1A.0650s0090 Salix purpurea SapurV1A.0650s0090 I 0.000
Thhalv10017614m.g Eutrema salsugineum Thhalv10017614m.g I 0.000
chr2.CM0002.60.nc Lotus japonicus chr2.CM0002.60.nc I 0.000
OGLUM05G13600 Oryza glumaepatula OGLUM05G13600 I 0.000
AMTR_s00007p00053050 Amborella trichopoda AMTR_s00007p00053050 I 0.000
BGIOSGA018232 Oryza indica BGIOSGA018232 I 0.000
Bo3g034810 Brassica oleracea Bo3g034810 I 0.000
Bo4g025410 Brassica oleracea Bo4g025410 I 0.000
Bra000178 Brassica rapa Bra000178 I 0.000
Bra004978 Brassica rapa Bra004978 I 0.000
GLYMA02G43240 Glycine max GLYMA02G43240 I 0.000
GLYMA14G06290 Glycine max GLYMA14G06290 I 0.000
GSMUA_Achr3G10100_001 Musa acuminata GSMUA_Achr3G10100_001 I 0.000
GSMUA_Achr5G07400_001 Musa acuminata GSMUA_Achr5G07400_001 I 0.000
GSMUA_Achr9G18060_001 Musa acuminata GSMUA_Achr9G18060_001 I 0.000
LPERR05G10140 Leersia perrieri LPERR05G10140 I 0.000
MTR_5g082950 Medicago truncatula MTR_5g082950 I 0.000
TCM_042471 Theobroma cacao TCM_042471 I 0.000
OMERI05G11540 Oryza meridionalis OMERI05G11540 I 0.000
ONIVA05G13490 Oryza nivara ONIVA05G13490 I 0.000
OPUNC05G11000 Oryza punctata OPUNC05G11000 I 0.000
ORGLA05G0109500 Oryza glaberrima ORGLA05G0109500 I 0.000
ABI4 Oryza sativa OS05G0351200 I 0.000
PGSC0003DMG400034739 Solanum tuberosum PGSC0003DMG400034739 I 0.000
PGSC0003DMG400041883 Solanum tuberosum PGSC0003DMG400041883 I 0.000
POPTR_0008s07120 Populus trichocarpa POPTR_0008s07120 I 0.000
POPTR_0010s19370 Populus trichocarpa POPTR_0010s19370 I 0.000
PRUPE_ppa015230mg Prunus persica PRUPE_ppa015230mg I 0.000
Sb09g016550 Sorghum bicolor Sb09g016550 I 0.000
SELMODRAFT_420500 Selaginella moellendorffii SELMODRAFT_420500 I 0.000
ABI4 Arabidopsis lyrata Al_scaffold_0004_2621 I 0.000