scaffold_600621.1 (Arabidopsis lyrata)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 scaffold_600621.1 T242015_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFB2A
M00869_2.00 		Arabidopsis thaliana
NNNNNTTCB
VGAANNNNN		 PBM
Franco-Zorrilla et al.(2014)
HSFB2A 		0.335 0.352
HSFB2A
M06952_2.00 		Arabidopsis thaliana
GAANNTTCYAGA
TCTRGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF6_col_a 		0.335 0.352
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.326 0.420
HSFA1E
M06939_2.00 		Arabidopsis thaliana
RGAANNTTCTAGA
TCTAGAANNTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_col_a 		0.320 0.375
HSFA1E
M06940_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA1E_colamp_a 		0.320 0.375
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_600621.1 HSF 5 97

Links

Other HSF family TFs
Other Arabidopsis lyrata TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HSFA1E Arabidopsis thaliana AT3G02990 D 0.320
HSFA4A Arabidopsis thaliana AT4G18880 D 0.326
HSFB2A Arabidopsis thaliana AT5G62020 D 0.335
RO3G_01093 Rhizopus oryzae RO3G_01093 I 0.321
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.329
Bo1g007320 Brassica oleracea Bo1g007320 I 0.341
Bo1g020010 Brassica oleracea Bo1g020010 I 0.326
Bo1g021700 Brassica oleracea Bo1g021700 I 0.350
Bo2g161830 Brassica oleracea Bo2g161830 I 0.336
Bo3g108110 Brassica oleracea Bo3g108110 I 0.334
Bo3g157380 Brassica oleracea Bo3g157380 I 0.335
Bo4g139200 Brassica oleracea Bo4g139200 I 0.365
Bo4g139630 Brassica oleracea Bo4g139630 I 0.366
Bo6g106450 Brassica oleracea Bo6g106450 I 0.320
Bo7g106320 Brassica oleracea Bo7g106320 I 0.332
Bra001071 Brassica rapa Bra001071 I 0.322
Bra002882 Brassica rapa Bra002882 I 0.385
Bra004272 Brassica rapa Bra004272 I 0.320
Bra010049 Brassica rapa Bra010049 I 0.334
Bra012571 Brassica rapa Bra012571 I 0.332
Bra013358 Brassica rapa Bra013358 I 0.326
Bra013406 Brassica rapa Bra013406 I 0.358
Bra013412 Brassica rapa Bra013412 I 0.325
Bra020988 Brassica rapa Bra020988 I 0.338
Bra022949 Brassica rapa Bra022949 I 0.358
Bra023584 Brassica rapa Bra023584 I 0.323
Bra025606 Brassica rapa Bra025606 I 0.374
Bra025608 Brassica rapa Bra025608 I 0.354
Bra025635 Brassica rapa Bra025635 I 0.361
Bra029291 Brassica rapa Bra029291 I 0.318
Bra029292 Brassica rapa Bra029292 I 0.318
Bra030021 Brassica rapa Bra030021 I 0.376
Bra032023 Brassica rapa Bra032023 I 0.323
Bra035993 Brassica rapa Bra035993 I 0.334
BRADI1G08890 Brachypodium distachyon BRADI1G08890 I 0.320
AT-HSFA6A Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000489 I 0.325
ATHSFA1E Arabidopsis lyrata fgenesh2_kg.3__246__AT3G02990.1 I 0.320
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.326
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.320
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.320
GLYMA20G29610 Glycine max GLYMA20G29610 I 0.324
GSTUM_00009357001 Tuber melanosporum GSTUM_00009357001 I 0.321
MTR_0020s0020 Medicago truncatula MTR_0020s0020 I 0.334
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.322
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.323
POPTR_0010s11490 Populus trichocarpa POPTR_0010s11490 I 0.325
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.324
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.324
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.336
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.325
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.405
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.348
AT-HSFB2A Arabidopsis lyrata scaffold_802851.1 I 0.335
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.321
Solyc06g072750.2 Solanum lycopersicum Solyc06g072750.2 I 0.319
hsf1 Schizosaccharomyces pombe SPAC2E12.02 I 0.320
TCM_011279 Theobroma cacao TCM_011279 I 0.332
TCM_029630 Theobroma cacao TCM_029630 I 0.320
HSF4 Vitis vinifera VIT_07s0031g00670 I 0.333
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.345
VIT_16s0039g01840 Vitis vinifera VIT_16s0039g01840 I 0.323
Ca_00428 Cicer arietinum Ca_00428 I 0.326
Ca_09277 Cicer arietinum Ca_09277 I 0.323
Ca_19774 Cicer arietinum Ca_19774 I 0.324
Pm005887 Prunus mume Pm005887 I 0.324
Pm010169 Prunus mume Pm010169 I 0.336
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.332
cassava18058.valid.m1 Manihot esculenta cassava18058.valid.m1 I 0.330
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.326
estExt_fgenesh1_pg.C_130266 Micromonas pusilla estExt_fgenesh1_pg.C_130266 I 0.321
mgf006143m Mimulus guttatus mgf006143m I 0.324
Bostr.19046s0011 Boechera stricta Bostr.19046s0011 I 0.320
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.416
Bostr.26833s0037 Boechera stricta Bostr.26833s0037 I 0.324
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.370
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.326
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.355
Bostr.3148s0085 Boechera stricta Bostr.3148s0085 I 0.329
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.372
Cagra.1194s0002 Capsella grandiflora Cagra.1194s0002 I 0.320
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.321
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.322
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.402
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.345
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.406
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.396
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.326
Cagra.4553s0008 Capsella grandiflora Cagra.4553s0008 I 0.324
Cagra.6369s0005 Capsella grandiflora Cagra.6369s0005 I 0.325
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.326
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.402
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.403
Carubv10013628m.g Capsella rubella Carubv10013628m.g I 0.320
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.372
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.322
Carubv10026734m.g Capsella rubella Carubv10026734m.g I 0.324
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.329
Carubv10028300m.g Capsella rubella Carubv10028300m.g I 0.325
est_cluster_kg.Chr_10__40__3200271:1 Micromonas sp RCC299 est_cluster_kg.Chr_10__40__3200271:1 I 0.319
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.322
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.329
evm.TU.supercontig_55.150 Carica papaya evm.TU.supercontig_55.150 I 0.335
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.332
Gorai.004G257000 Gossypium raimondii Gorai.004G257000 I 0.318
Gorai.007G033300 Gossypium raimondii Gorai.007G033300 I 0.320
Gorai.007G053900 Gossypium raimondii Gorai.007G053900 I 0.326
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.320
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.337
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.324
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.334
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.324
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.328
MDP0000126826 Malus domestica MDP0000126826 I 0.327
MDP0000156337 Malus domestica MDP0000156337 I 0.325
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.333
SapurV1A.0151s0340 Salix purpurea SapurV1A.0151s0340 I 0.331
SapurV1A.0182s0110 Salix purpurea SapurV1A.0182s0110 I 0.330
SapurV1A.3823s0010 Salix purpurea SapurV1A.3823s0010 I 0.331
Thhalv10003365m.g Eutrema salsugineum Thhalv10003365m.g I 0.320
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.374
Thhalv10004690m.g Eutrema salsugineum Thhalv10004690m.g I 0.329
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.318
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.323
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.355
Thhalv10027510m.g Eutrema salsugineum Thhalv10027510m.g I 0.361
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.377
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.407
PK02428.1 Cannabis sativa PK02428.1 I 0.321
PK03562.1 Cannabis sativa PK03562.1 I 0.319
PK09831.1 Cannabis sativa PK09831.1 I 0.323
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I 0.320
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.319
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.339
Bo4g139270 Brassica oleracea Bo4g139270 N 0.352
Bra025611 Brassica rapa Bra025611 N 0.350
fgenesh2_kg.2__2223__AT1G79245.1 Arabidopsis lyrata fgenesh2_kg.2__2223__AT1G79245.1 N 0.339
GSPATT00028152001 Paramecium tetraurelia GSPATT00028152001 N 0.321
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.381
e_gw.355.83.1 Branchiostoma floridae e_gw.355.83.1 N 0.318
e_gw.355.85.1 Branchiostoma floridae e_gw.355.85.1 N 0.318
fgenesh2_kg.1_#_319_#_2595_1_CCUX_EXTA Fragilariopsis cylindrus fgenesh2_kg.1_#_319_#_2595_1_CCUX_EXTA N 0.332
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.338
Cagra.2516s0029 Capsella grandiflora Cagra.2516s0029 N 0.342
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.360