Carubv10006025m.g (Capsella rubella)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Carubv10006025m.g T243050_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.335 0.382
HSFB3
M06937_2.00 		Arabidopsis thaliana
RRAANMWTCTAGAAV
BTTCTAGAWKNTTYY		 Dap-seq
OMalley et al.(2016)
HSFB3_col_a 		0.322 0.371
HSFB3
M06938_2.00 		Arabidopsis thaliana
AABSTTCTAGAAN
NTTCTAGAASVTT		 Dap-seq
OMalley et al.(2016)
HSFB3_colamp_a 		0.322 0.371
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006025m HSF 12 104

Links

Other HSF family TFs
Other Capsella rubella TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.613
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.610
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.603
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.580
scaffold_702446.1 Arabidopsis lyrata scaffold_702446.1 N 0.533
scaffold_702441.1 Arabidopsis lyrata scaffold_702441.1 I 0.417
Cagra.3262s0012 Capsella grandiflora Cagra.3262s0012 I 0.417
AT4G19630 Arabidopsis thaliana AT4G19630 N 0.412
Bra025611 Brassica rapa Bra025611 N 0.410
scaffold_600621.1 Arabidopsis lyrata scaffold_600621.1 I 0.402
Bostr.20129s0193 Boechera stricta Bostr.20129s0193 I 0.398
Bra025606 Brassica rapa Bra025606 I 0.390
Bo4g139630 Brassica oleracea Bo4g139630 I 0.387
Bra025635 Brassica rapa Bra025635 I 0.383
Bra025608 Brassica rapa Bra025608 I 0.379
Bo4g139200 Brassica oleracea Bo4g139200 I 0.378
Thhalv10026540m.g Eutrema salsugineum Thhalv10026540m.g I 0.376
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.372
Bo4g139270 Brassica oleracea Bo4g139270 N 0.370
Bostr.27895s0020 Boechera stricta Bostr.27895s0020 N 0.368
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.366
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.366
Al_scaffold_0003_3814 Arabidopsis lyrata Al_scaffold_0003_3814 I 0.365
Bra002882 Brassica rapa Bra002882 I 0.364
Thhalv10027510m.g Eutrema salsugineum Thhalv10027510m.g I 0.362
Thhalv10028027m.g Eutrema salsugineum Thhalv10028027m.g I 0.362
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.361
Bra030021 Brassica rapa Bra030021 I 0.358
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.357
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.356
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.356
AT1G77570 Arabidopsis thaliana AT1G77570 I 0.353
Bra013406 Brassica rapa Bra013406 I 0.352
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.350
Thhalv10012073m.g Eutrema salsugineum Thhalv10012073m.g I 0.350
Gorai.007G053900 Gossypium raimondii Gorai.007G053900 I 0.349
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.345
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.344
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.344
GRMZM2G384339 Zea mays GRMZM2G384339 I 0.343
Si035526m.g Setaria italica Si035526m.g I 0.343
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.343
Pavir.Ib04475 Panicum virgatum Pavir.Ib04475 I 0.343
Thhalv10003411m.g Eutrema salsugineum Thhalv10003411m.g I 0.343
LPERR03G35390 Leersia perrieri LPERR03G35390 I 0.341
OBART03G41440 Oryza barthii OBART03G41440 I 0.341
OGLUM03G41290 Oryza glumaepatula OGLUM03G41290 I 0.341
OMERI03G38170 Oryza meridionalis OMERI03G38170 I 0.341
ONIVA03G43540 Oryza nivara ONIVA03G43540 I 0.341
OPUNC03G38490 Oryza punctata OPUNC03G38490 I 0.341
ORGLA03G0383200 Oryza glaberrima ORGLA03G0383200 I 0.341
HSFA1 Oryza sativa OS03G0854500 I 0.341
Cagra.2516s0029 Capsella grandiflora Cagra.2516s0029 N 0.341
Eucgr.I00929 Eucalyptus grandis Eucgr.I00929 I 0.341
Sb01g000730 Sorghum bicolor Sb01g000730 I 0.339
Pavir.Ia00087 Panicum virgatum Pavir.Ia00087 I 0.339
PK09831.1 Cannabis sativa PK09831.1 I 0.339
Carubv10024599m.g Capsella rubella Carubv10024599m.g I 0.338
GSMUA_Achr4G04500_001 Musa acuminata GSMUA_Achr4G04500_001 I 0.337
mgf006143m Mimulus guttatus mgf006143m I 0.337
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.336
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.336
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.336
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.336
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.336
HSFA4A Arabidopsis thaliana AT4G18880 D 0.335
Bo1g020010 Brassica oleracea Bo1g020010 I 0.335
Bo7g106320 Brassica oleracea Bo7g106320 I 0.335
Bra012571 Brassica rapa Bra012571 I 0.335
Bra013358 Brassica rapa Bra013358 I 0.335
BRADI1G01130 Brachypodium distachyon BRADI1G01130 I 0.335
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.335
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.335
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.335
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.335
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.334
OLONG_013342 Oryza longistaminata OLONG_013342 I 0.334
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.334
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.333
TRIUR3_08676 Triticum urartu TRIUR3_08676 I 0.333
Cucsa.164290 Cucumis sativus Cucsa.164290 I 0.333
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.333
MDP0000126826 Malus domestica MDP0000126826 I 0.333
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.332
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.332
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.332
PGSC0003DMG401004023 Solanum tuberosum PGSC0003DMG401004023 I 0.331
Solyc02g090820.2 Solanum lycopersicum Solyc02g090820.2 I 0.331
TCM_029630 Theobroma cacao TCM_029630 I 0.331
Ciclev10015541m.g Citrus clementina Ciclev10015541m.g I 0.331
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.331
orange1.1g016378m.g Citrus sinensis orange1.1g016378m.g I 0.331
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.331
TCM_011279 Theobroma cacao TCM_011279 I 0.330
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.330
GLYMA01G39260 Glycine max GLYMA01G39260 I 0.329
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.329
GLYMA11G06010 Glycine max GLYMA11G06010 I 0.329
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.329
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.329
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.329
Bo1g021700 Brassica oleracea Bo1g021700 I 0.328
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.328
Bo3g157380 Brassica oleracea Bo3g157380 I 0.327
Bra020988 Brassica rapa Bra020988 I 0.327
Aquca_014_00743 Aquilegia coerulea Aquca_014_00743 I 0.327
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.326
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.326
Bostr.11568s0011 Boechera stricta Bostr.11568s0011 I 0.325
Carubv10007409m.g Capsella rubella Carubv10007409m.g I 0.325
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.325
PK02428.1 Cannabis sativa PK02428.1 I 0.325
SMU15027452 Schmidtea mediterranea SMU15027452 I 0.325
BGIOSGA009826 Oryza indica BGIOSGA009826 I 0.324
AT-HSFB3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001910 I 0.324
OB03G40890 Oryza brachyantha OB03G40890 I 0.324
OBART03G33860 Oryza barthii OBART03G33860 I 0.324
OGLUM03G33530 Oryza glumaepatula OGLUM03G33530 I 0.324
ONIVA03G35150 Oryza nivara ONIVA03G35150 I 0.324
OPUNC03G31000 Oryza punctata OPUNC03G31000 I 0.324
ORGLA03G0308600 Oryza glaberrima ORGLA03G0308600 I 0.324
ORUFI03G35260 Oryza rufipogon ORUFI03G35260 I 0.324
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.324
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.323
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I 0.323
GSMUA_Achr3G27600_001 Musa acuminata GSMUA_Achr3G27600_001 I 0.323
OMERI03G31070 Oryza meridionalis OMERI03G31070 I 0.323
HSF4 Populus trichocarpa POPTR_0007s11030 I 0.323
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.323
Traes_5BL_E15759DAD Triticum aestivum Traes_5BL_E15759DAD I 0.323
Pm010169 Prunus mume Pm010169 I 0.323
Eucgr.C03465 Eucalyptus grandis Eucgr.C03465 I 0.323
HSFB3 Arabidopsis thaliana AT2G41690 D 0.322
Bo1g007320 Brassica oleracea Bo1g007320 I 0.322
Bra000235 Brassica rapa Bra000235 I 0.322
GLYMA11G01190 Glycine max GLYMA11G01190 I 0.322
Ca_08627 Cicer arietinum Ca_08627 I 0.322
Eucgr.C03440 Eucalyptus grandis Eucgr.C03440 I 0.322
Bra022949 Brassica rapa Bra022949 I 0.321
PGSC0003DMG401027812 Solanum tuberosum PGSC0003DMG401027812 I 0.321
Bo1g005040 Brassica oleracea Bo1g005040 I 0.320
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.320
Thhalv10017795m.g Eutrema salsugineum Thhalv10017795m.g I 0.320
MLOC_51191 Hordeum vulgare MLOC_51191 I 0.319
ORUFI03G43230 Oryza rufipogon ORUFI03G43230 I 0.319
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.319
Solyc03g006000.2 Solanum lycopersicum Solyc03g006000.2 I 0.319
Ca_09277 Cicer arietinum Ca_09277 I 0.319
Pm005887 Prunus mume Pm005887 I 0.319
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.319
PK03562.1 Cannabis sativa PK03562.1 I 0.319
Cucsa.378560 Cucumis sativus Cucsa.378560 I 0.318