Carubv10007409m.g (Capsella rubella)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 Carubv10007409m.g T243054_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.340 0.518
HSF4
M03325_2.00 		Homo sapiens
GAANNTTCBVGAA
TTCBVGAANNTTC		 SELEX
Jolma et al.(2013)
HSF4_1 		0.322 0.349
HSF4
M05509_2.00 		Homo sapiens
VGAABVTTCKVGAAN
NTTCBMGAABVTTCB		 SELEX
Yin et al.(2017)
HSF4_eDBD_HT-SELEX 		0.322 0.349
HSF4
M10862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF4_Q3 		0.322 0.349
HSF4
M05510_2.00 		Homo sapiens
RGAABVWDCYRGAWN
NWTCYRGHWBVTTCY		 SELEX
Yin et al.(2017)
HSF4_eDBD_Methyl-HT-SELEX 		0.322 0.349
HSFA1B
M06948_2.00 		Arabidopsis thaliana
GAANNTTCTAGA
TCTAGAANNTTC		 Dap-seq
OMalley et al.(2016)
HSF3_col_a 		0.319 0.434
HSFA1B
M06949_2.00 		Arabidopsis thaliana
TTCYRG
CYRGAA		 Dap-seq
OMalley et al.(2016)
HSF3_colamp_a 		0.319 0.434
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007409m HSF 19 104

Links

Other HSF family TFs
Other Capsella rubella TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.13025s0006 Capsella grandiflora Cagra.13025s0006 I 0.544
fgenesh1_pg.C_scaffold_7000870 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000870 I 0.383
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.369
scaffold_702873.1 Arabidopsis lyrata scaffold_702873.1 I 0.363
30026.m001484 Ricinus communis 30026.m001484 I 0.344
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.343
mgf006947m Mimulus guttatus mgf006947m I 0.343
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.342
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.342
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I 0.342
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.341
HSFA4A Arabidopsis thaliana AT4G18880 D 0.340
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.340
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.340
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.340
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.340
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.340
Thhalv10028026m.g Eutrema salsugineum Thhalv10028026m.g I 0.340
Bo1g020010 Brassica oleracea Bo1g020010 I 0.339
Bra013358 Brassica rapa Bra013358 I 0.339
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.339
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.338
Cagra.3262s0013 Capsella grandiflora Cagra.3262s0013 I 0.338
GLYMA15G09280 Glycine max GLYMA15G09280 I 0.337
mgf006143m Mimulus guttatus mgf006143m I 0.337
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.337
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.336
TCM_029630 Theobroma cacao TCM_029630 I 0.336
Ca_00428 Cicer arietinum Ca_00428 I 0.336
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.336
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.335
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.335
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.334
Bo3g157380 Brassica oleracea Bo3g157380 I 0.333
Bo7g106320 Brassica oleracea Bo7g106320 I 0.333
Bra012571 Brassica rapa Bra012571 I 0.333
BRADI2G18980 Brachypodium distachyon BRADI2G18980 I 0.333
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.333
Pm010169 Prunus mume Pm010169 I 0.333
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.333
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.332
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.332
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.332
AC205471.4_FG003 Zea mays AC205471.4_FG003 I 0.331
Sb09g026440 Sorghum bicolor Sb09g026440 I 0.331
gw1.207.102.1 Physcomitrella patens gw1.207.102.1 I 0.331
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.331
Lus10026819.g Linum usitatissimum Lus10026819.g I 0.331
MDP0000126826 Malus domestica MDP0000126826 I 0.331
SELMODRAFT_107503 Selaginella moellendorffii SELMODRAFT_107503 I 0.330
SELMODRAFT_110881 Selaginella moellendorffii SELMODRAFT_110881 I 0.330
evm.TU.supercontig_124.4 Carica papaya evm.TU.supercontig_124.4 I 0.330
F775_21225 Aegilops tauschii F775_21225 I 0.329
GRMZM2G115456 Zea mays GRMZM2G115456 I 0.329
MLOC_11286 Hordeum vulgare MLOC_11286 I 0.329
Si022026m.g Setaria italica Si022026m.g I 0.329
TRIUR3_18146 Triticum urartu TRIUR3_18146 I 0.329
Pavir.Ca01519 Panicum virgatum Pavir.Ca01519 I 0.329
GLYMA19G31940 Glycine max GLYMA19G31940 I 0.328
Solyc07g055710.2 Solanum lycopersicum Solyc07g055710.2 I 0.328
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.328
Bra020988 Brassica rapa Bra020988 I 0.327
Carubv10006026m.g Capsella rubella Carubv10006026m.g I 0.327
Ciclev10015472m.g Citrus clementina Ciclev10015472m.g I 0.326
Gorai.003G053300 Gossypium raimondii Gorai.003G053300 I 0.326
BRADI1G01130 Brachypodium distachyon BRADI1G01130 I 0.325
SELMODRAFT_114534 Selaginella moellendorffii SELMODRAFT_114534 I 0.325
SELMODRAFT_92634 Selaginella moellendorffii SELMODRAFT_92634 I 0.325
Aquca_039_00029 Aquilegia coerulea Aquca_039_00029 I 0.325
Cagra.3262s0011 Capsella grandiflora Cagra.3262s0011 I 0.325
Carubv10006025m.g Capsella rubella Carubv10006025m.g I 0.325
evm.TU.supercontig_50.58 Carica papaya evm.TU.supercontig_50.58 I 0.325
Lus10036062.g Linum usitatissimum Lus10036062.g I 0.325
SapurV1A.0053s0820 Salix purpurea SapurV1A.0053s0820 I 0.324
PK26417.1 Cannabis sativa PK26417.1 I 0.324
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I 0.323
GSMUA_Achr6G31750_001 Musa acuminata GSMUA_Achr6G31750_001 I 0.323
Cagra.3262s0014 Capsella grandiflora Cagra.3262s0014 I 0.323
Cagra.3356s0067 Capsella grandiflora Cagra.3356s0067 I 0.323
Carubv10004840m.g Capsella rubella Carubv10004840m.g I 0.323
Bo1g155010 Brassica oleracea Bo1g155010 I 0.322
Bra021381 Brassica rapa Bra021381 I 0.322
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I 0.322
HSF4 Bos taurus ENSBTAG00000003514 I 0.322
HSF4 Canis familiaris ENSCAFG00000020379 I 0.322
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I 0.322
HSF4 Dasypus novemcinctus ENSDNOG00000032363 I 0.322
Hsf4 Dipodomys ordii ENSDORG00000015128 I 0.322
HSF4 Equus caballus ENSECAG00000016708 I 0.322
HSF4 Felis catus ENSFCAG00000014099 I 0.322
HSF4 Homo sapiens ENSG00000102878 D 0.322
HSF4 Gorilla gorilla ENSGGOG00000011899 I 0.322
HSF4 Macaca mulatta ENSMMUG00000005906 I 0.322
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I 0.322
Hsf4 Mus musculus ENSMUSG00000033249 I 0.322
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I 0.322
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I 0.322
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I 0.322
HSF4 Otolemur garnettii ENSOGAG00000001391 I 0.322
HSF4 Ochotona princeps ENSOPRG00000015074 I 0.322
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I 0.322
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I 0.322
HSF4 Pan troglodytes ENSPTRG00000034007 I 0.322
HSF4 Pteropus vampyrus ENSPVAG00000000402 I 0.322
HSF4 Sus scrofa ENSSSCG00000002792 I 0.322
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I 0.322
HSF4 Tursiops truncatus ENSTTRG00000010241 I 0.322
OB03G27910 Oryza brachyantha OB03G27910 I 0.322
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I 0.322
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.322
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.322
SapurV1A.0151s0340 Salix purpurea SapurV1A.0151s0340 I 0.322
SapurV1A.3823s0010 Salix purpurea SapurV1A.3823s0010 I 0.322
Bra023584 Brassica rapa Bra023584 I 0.321
POPTR_0006s11680 Populus trichocarpa POPTR_0006s11680 I 0.321
Lus10011185.g Linum usitatissimum Lus10011185.g I 0.321
SapurV1A.0181s0030 Salix purpurea SapurV1A.0181s0030 I 0.321
BGIOSGA029640 Oryza indica BGIOSGA029640 I 0.320
GSMUA_Achr3G06020_001 Musa acuminata GSMUA_Achr3G06020_001 I 0.320
GSMUA_Achr4G17040_001 Musa acuminata GSMUA_Achr4G17040_001 I 0.320
OBART09G12650 Oryza barthii OBART09G12650 I 0.320
OGLUM09G13090 Oryza glumaepatula OGLUM09G13090 I 0.320
OLONG_009002 Oryza longistaminata OLONG_009002 I 0.320
OMERI09G10050 Oryza meridionalis OMERI09G10050 I 0.320
ONIVA03G20850 Oryza nivara ONIVA03G20850 I 0.320
ORGLA09G0096400 Oryza glaberrima ORGLA09G0096400 I 0.320
ORUFI09G13600 Oryza rufipogon ORUFI09G13600 I 0.320
HSFB4C Oryza sativa OS09G0455200 I 0.320
POPTR_0009s07220 Populus trichocarpa POPTR_0009s07220 I 0.320
Solyc11g064990.1 Solanum lycopersicum Solyc11g064990.1 I 0.320
TCM_040889 Theobroma cacao TCM_040889 I 0.320
Cla022929 Citrullus lanatus Cla022929 I 0.320
cassava34318.m1 Manihot esculenta cassava34318.m1 I 0.320
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I 0.320
SapurV1A.0253s0300 Salix purpurea SapurV1A.0253s0300 I 0.320
SapurV1A.3263s0010 Salix purpurea SapurV1A.3263s0010 I 0.320
AMTR_s00073p00033500 Amborella trichopoda AMTR_s00073p00033500 I 0.319
HSFA1B Arabidopsis thaliana AT5G16820 D 0.319
BRADI4G32050 Brachypodium distachyon BRADI4G32050 I 0.319
HSF4 Myotis lucifugus ENSMLUG00000011083 I 0.319
F775_52216 Aegilops tauschii F775_52216 I 0.319
GRMZM2G088242 Zea mays GRMZM2G088242 I 0.319
LPERR09G09110 Leersia perrieri LPERR09G09110 I 0.319
MLOC_73356 Hordeum vulgare MLOC_73356 I 0.319
OB09G19080 Oryza brachyantha OB09G19080 I 0.319
OPUNC09G11010 Oryza punctata OPUNC09G11010 I 0.319
POPTR_0004s06090 Populus trichocarpa POPTR_0004s06090 I 0.319
Sb01g034500 Sorghum bicolor Sb01g034500 I 0.319
Sb02g026500 Sorghum bicolor Sb02g026500 I 0.319
scaffold_702717.1 Arabidopsis lyrata scaffold_702717.1 I 0.319
Si030056m.g Setaria italica Si030056m.g I 0.319
Si040272m.g Setaria italica Si040272m.g I 0.319
Traes_5BL_A847CD732 Triticum aestivum Traes_5BL_A847CD732 I 0.319
TRIUR3_33705 Triticum urartu TRIUR3_33705 I 0.319
Aquca_004_00776 Aquilegia coerulea Aquca_004_00776 I 0.319
Ciclev10011531m.g Citrus clementina Ciclev10011531m.g I 0.319
Eucgr.I00929 Eucalyptus grandis Eucgr.I00929 I 0.319
Gorai.005G102000 Gossypium raimondii Gorai.005G102000 I 0.319
Pavir.Bb02324 Panicum virgatum Pavir.Bb02324 I 0.319
Pavir.J10885 Panicum virgatum Pavir.J10885 I 0.319
SapurV1A.0208s0230 Salix purpurea SapurV1A.0208s0230 I 0.319
GSMUA_Achr5G07840_001 Musa acuminata GSMUA_Achr5G07840_001 I 0.318
OB08G24900 Oryza brachyantha OB08G24900 I 0.318
OGLUM08G18590 Oryza glumaepatula OGLUM08G18590 I 0.318
AT-HSFA8 Vitis vinifera VIT_01s0011g05970 I 0.318
Ca_08627 Cicer arietinum Ca_08627 I 0.318