ENSFALG00000013442 (Ficedula albicollis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSFALG00000013442 T244066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF1
M08142_2.00 		Homo sapiens
RWANNGAAASYGAAASYRNNN
NNNYRSTTTCRSTTTCNNTWY		 ChIP-seq
Mathelier et al.(2014)
MA0050.2 		0.914 0.914
IRF1
M09233_2.00 		Homo sapiens
NRAANNGAAASWGAAASHRN
NYDSTTTCWSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF1_HUMAN.H11MO.0.A 		0.914 0.914
Irf1
M09242_2.00 		Mus musculus
VRAANNGAAASYGAAASYVN
NBRSTTTCRSTTTCNNTTYB		 Misc
Kulakovskiy et al.(2013)
IRF1_MOUSE.H11MO.0.A 		0.914 0.914
IRF1
M09594_2.00 		Homo sapiens
GAAASTGAAASY
RSTTTCASTTTC		 Misc
Heinz et al.(2010)
PBMC-IRF1_GSE43036 		0.914 0.914
IRF1
M10879_2.00 		Homo sapiens
SAAAASYGAAASY
RSTTTCRSTTTTS		 Transfac
Matys et al.(2006)
V$IRF1_01 		0.914 0.914
IRF1
M10880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_03 		0.914 0.914
IRF1
M10881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q5 		0.914 0.914
IRF1
M10882_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF1_Q6 		0.914 0.914
IRF2
M05545_2.00 		Homo sapiens
NGAAAVYGAAAS
STTTCRBTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_HT-SELEX 		0.790 0.790
IRF2
M02691_2.00 		Homo sapiens
SGAAAGYGAAASYNWWHH
DDWWNRSTTTCRCTTTCS		 SELEX
Mathelier et al.(2014)
MA0051.1 		0.790 0.790
IRF2
M09237_2.00 		Homo sapiens
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_HUMAN.H11MO.0.A 		0.790 0.790
IRF2
M09596_2.00 		Homo sapiens
NRAAVNRRAASB
VSTTYYNBTTYN		 Misc
Heinz et al.(2010)
Erythroblas-IRF2_GSE36985 		0.790 0.790
IRF2
M10892_2.00 		Homo sapiens
GAAAAGYGAAASY
RSTTTCRCTTTTC		 Transfac
Matys et al.(2006)
V$IRF2_01 		0.790 0.790
IRF2
M10893_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF2_Q6 		0.790 0.790
IRF2
M05546_2.00 		Homo sapiens
NGAAASYGAAAS
STTTCRSTTTCN		 SELEX
Yin et al.(2017)
IRF2_FL_Methyl-HT-SELEX 		0.790 0.790
Irf2
M00805_2.00 		Mus musculus
NDWNHGAAAV
BTTTCDNWHN		 PBM
Weirauch et al.(2013)
pTH2835 		0.781 0.781
Irf2
M09245_2.00 		Mus musculus
NRAANNGAAASYGAAASYRV
BYRSTTTCRSTTTCNNTTYN		 Misc
Kulakovskiy et al.(2013)
IRF2_MOUSE.H11MO.0.B 		0.781 0.781
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000014035 IRF 7 112

Links

Other IRF family TFs
Other Ficedula albicollis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI05G19800 Oryza rufipogon ORUFI05G19800 N
OMERI05G16220 Oryza meridionalis OMERI05G16220 N
ONIVA01G42500 Oryza nivara ONIVA01G42500 N
ONIVA05G19570 Oryza nivara ONIVA05G19570 N
OPUNC01G36480 Oryza punctata OPUNC01G36480 N
OPUNC05G16320 Oryza punctata OPUNC05G16320 N
ORGLA01G0314400 Oryza glaberrima ORGLA01G0314400 N
ORGLA05G0161500 Oryza glaberrima ORGLA05G0161500 N
ORUFI01G40950 Oryza rufipogon ORUFI01G40950 N
OMERI01G34580 Oryza meridionalis OMERI01G34580 N
OS01G0853700 Oryza sativa OS01G0853700 N
OS05G0449900 Oryza sativa OS05G0449900 N
Sb03g040160 Sorghum bicolor Sb03g040160 N
Sb09g022060 Sorghum bicolor Sb09g022060 N
Si022816m.g Setaria italica Si022816m.g N
TRAES3BF018800030CFD_g Triticum aestivum TRAES3BF018800030CFD_g N
Pavir.Ea03421 Panicum virgatum Pavir.Ea03421 N
Pavir.J04337 Panicum virgatum Pavir.J04337 N
MLOC_9835 Hordeum vulgare MLOC_9835 N
BRADI2G23710 Brachypodium distachyon BRADI2G23710 N
F775_29279 Aegilops tauschii F775_29279 N
GRMZM2G056986 Zea mays GRMZM2G056986 N
GRMZM2G125522 Zea mays GRMZM2G125522 N
GRMZM2G370896 Zea mays GRMZM2G370896 N
LPERR01G32290 Leersia perrieri LPERR01G32290 N
LPERR05G14660 Leersia perrieri LPERR05G14660 N
MLOC_70659 Hordeum vulgare MLOC_70659 N
BGIOSGA000472 Oryza indica BGIOSGA000472 N
OB01G46330 Oryza brachyantha OB01G46330 N
OB05G26340 Oryza brachyantha OB05G26340 N
OBART01G37590 Oryza barthii OBART01G37590 N
OBART01G37610 Oryza barthii OBART01G37610 N
OGLUM01G41520 Oryza glumaepatula OGLUM01G41520 N
OGLUM05G19710 Oryza glumaepatula OGLUM05G19710 N
OLONG_007151 Oryza longistaminata OLONG_007151 N