ENSTNIG00000002469 (Tetraodon nigroviridis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSTNIG00000002469 T244416_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irf4
M00175_2.00 		Mus musculus
NNNYGAWASN
NSTWTCRNNN		 PBM
Badis et al.(2009)
Irf4_3476 		0.714 0.714
IRF4
M03334_2.00 		Homo sapiens
HCGAAACCGAAACYW
WRGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF4_1 		0.714 0.714
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.714 0.714
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.714 0.714
IRF4
M05539_2.00 		Homo sapiens
NYGAAACYGAAACYN
NRGTTTCRGTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_HT-SELEX 		0.714 0.714
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.714 0.714
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.714 0.714
IRF4
M07978_2.00 		Homo sapiens
DNDVNNGWWVTGAVWVWN
NWBWBTCABWWCNNBHNH		 ChIP-seq
Gerstein et al.(2012)
GM12878_IRF4_HudsonAlpha 		0.714 0.714
IRF4
M09235_2.00 		Homo sapiens
NDWDRRGGAASTGARAVH
DBTYTCASTTCCYYHWHN		 Misc
Kulakovskiy et al.(2013)
IRF4_HUMAN.H11MO.0.A 		0.714 0.714
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.714 0.714
Irf4
M09243_2.00 		Mus musculus
NDAWVVRGAASTGARAVH
DBTYTCASTTCYBBWTHN		 Misc
Kulakovskiy et al.(2013)
IRF4_MOUSE.H11MO.0.A 		0.714 0.714
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.714 0.714
IRF4
M09595_2.00 		Homo sapiens
HNYGAAASYD
HRSTTTCRND		 Misc
Heinz et al.(2010)
GM12878-IRF4_GSE32465 		0.714 0.714
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.714 0.714
IRF4
M10885_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_07 		0.714 0.714
IRF4
M10886_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_08 		0.714 0.714
IRF4
M10887_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5_01 		0.714 0.714
IRF4
M10888_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q5 		0.714 0.714
IRF4
M10889_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF4_Q6 		0.714 0.714
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.714 0.714
IRF4
M05540_2.00 		Homo sapiens
NYGAAASYGAWASHN
NDSTWTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF4_FL_Methyl-HT-SELEX 		0.714 0.714
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.714 0.714
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000005019 IRF 1 63

Links

Other IRF family TFs
Other Tetraodon nigroviridis TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM6 Homo sapiens ENSG00000061455 D 0.000
ENSSHAG00000009542 Sarcophilus harrisii ENSSHAG00000009542 I 0.000
ENSOARG00000018873 Ovis aries ENSOARG00000018873 I 0.000
PRDM6 Oryctolagus cuniculus ENSOCUG00000003454 I 0.000
ENSONIG00000013818 Oreochromis niloticus ENSONIG00000013818 I 0.000
PRDM6 Ochotona princeps ENSOPRG00000004020 I 0.000
ENSORLG00000017089 Oryzias latipes ENSORLG00000017089 I 0.000
ENSPANG00000020936 Papio anubis ENSPANG00000020936 I 0.000
ENSPFOG00000000918 Poecilia formosa ENSPFOG00000000918 I 0.000
ENSPSIG00000007714 Pelodiscus sinensis ENSPSIG00000007714 I 0.000
PRDM6 Pan troglodytes ENSPTRG00000017180 I 0.000
PRDM6 Pteropus vampyrus ENSPVAG00000006781 I 0.000
Prdm6 Rattus norvegicus ENSRNOG00000030486 I 0.000
ENSNLEG00000012064 Nomascus leucogenys ENSNLEG00000012064 I 0.000
PRDM6 Sus scrofa ENSSSCG00000014238 I 0.000
PRDM6 Tupaia belangeri ENSTBEG00000010088 I 0.000
ENSTNIG00000004450 Tetraodon nigroviridis ENSTNIG00000004450 I 0.000
PRDM6 Takifugu rubripes ENSTRUG00000011582 I 0.000
ENSTSYG00000009407 Tarsius syrichta ENSTSYG00000009407 I 0.000
Alligator_sinensis_CCG004791.1 Alligator sinensis Alligator_sinensis_CCG004791.1 I 0.000
ENSBTAP00000027421-D1 Bos grunniens ENSBTAP00000027421-D1 I 0.000
ENSP00000261364 Macaca fascicularis ENSP00000261364 I 0.000
Myotis_brandtii_PRDM6_10015768 Myotis brandtii Myotis_brandtii_PRDM6_10015768 I 0.000
Ogr18847 Ophisaurus gracilis Ogr18847 I 0.000
Pvit_11059 Pogona vitticeps Pvit_11059 I 0.000
prdm6 Xenopus tropicalis XB-GENE-854907 I 0.000
PRDM6 Felis catus ENSFCAG00000026249 I 0.000
ENSAMEG00000015711 Ailuropoda melanoleuca ENSAMEG00000015711 I 0.000
ENSAMXG00000012588 Astyanax mexicanus ENSAMXG00000012588 I 0.000
PRDM6 Bos taurus ENSBTAG00000020578 I 0.000
PRDM6 Canis familiaris ENSCAFG00000023666 I 0.000
PRDM6 Choloepus hoffmanni ENSCHOG00000003085 I 0.000
PRDM6 Callithrix jacchus ENSCJAG00000017318 I 0.000
ENSCPOG00000004258 Cavia porcellus ENSCPOG00000004258 I 0.000
ENSCSAG00000014599 Chlorocebus sabaeus ENSCSAG00000014599 I 0.000
PRDM6 Dasypus novemcinctus ENSDNOG00000006337 I 0.000
PRDM6 Equus caballus ENSECAG00000004532 I 0.000
PRDM6 Erinaceus europaeus ENSEEUG00000005543 I 0.000
ENSFALG00000007522 Ficedula albicollis ENSFALG00000007522 I 0.000
ENSOANG00000001527 Ornithorhynchus anatinus ENSOANG00000001527 I 0.000
PRDM6 Gallus gallus ENSGALG00000005351 I 0.000
PRDM6 Loxodonta africana ENSLAFG00000000396 I 0.000
ENSLOCG00000008663 Lepisosteus oculatus ENSLOCG00000008663 I 0.000
ENSMEUG00000011470 Macropus eugenii ENSMEUG00000011470 I 0.000
ENSMICG00000007754 Microcebus murinus ENSMICG00000007754 I 0.000
PRDM6 Myotis lucifugus ENSMLUG00000010064 I 0.000
ENSMMUG00000010652 Macaca mulatta ENSMMUG00000010652 I 0.000
PRDM6 Monodelphis domestica ENSMODG00000013415 I 0.000
ENSMPUG00000012965 Mustela putorius furo ENSMPUG00000012965 I 0.000
Prdm6 Mus musculus ENSMUSG00000069378 I 0.000
PRDM6 Anolis carolinensis ENSACAG00000003401 I 0.000