CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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FL
(
Populus trichocarpa
)
Leafy
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01698 (FLO_LFY)
IPR002910
POPTR_0015s11820
T244735_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LFY
M02692_2.00
Arabidopsis thaliana
YWTKRACCRSYGGTYMAWR
YWTKRACCRSYGGTYMAWR
SELEX
Mathelier et al.(2014)
MA0590.1
0.863
0.863
LFY
M10895_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$LFY_Q2
0.863
0.863
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0015s11820.1
Leafy
1
363
MDPEAFTASLFKWDTRAMVPHPNRLLEMVPPPQQPPAAAFAVRPRELCGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMKDEELDEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLDEEDPRRRQLLSGDNNTNTLDALSQEGFSEEPVQQDKEAAGSGGRGTWEAVAAGERKKQSGRKKGQRKVVDLDGDGEHGGAICERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQSIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNALRRAFKERGENVGAWRQACYKPLVAIASRQGWDIDSIFNAHPRLAIWYVPTKLRQLCYAERNSAT
Links
Other
Leafy
family TFs
Other
Populus trichocarpa
TFs
69 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANIA_00835
Aspergillus nidulans
CADANIAG00001825
D
HCBG_01493
Histoplasma capsulatum
HCBG_01493
I
Pc16g14350
Penicillium chrysogenum
Pc16g14350
I
e_gw1.00042.299.1
Aspergillus carbonarius
e_gw1.00042.299.1
I
U727_00432193281
Penicillium solitum
U727_00432193281
I
TRV_03094
Trichophyton verrucosum
TRV_03094
I
TESG_04754
Trichophyton tonsurans
TESG_04754
I
TESG_01899
Trichophyton tonsurans
TESG_01899
I
TEQG_04988
Trichophyton equinum
TEQG_04988
I
TEQG_01597
Trichophyton equinum
TEQG_01597
I
PITC_044200
Penicillium italicum
PITC_044200
I
PEX1_049490
Penicillium expansum
PEX1_049490
I
PDIP_65750
Penicillium digitatum
PDIP_65750
I
PCH_Pc16g14350
Penicillium rubens
PCH_Pc16g14350
I
MGYG_06985
Microsporum gypseum
MGYG_06985
I
MGYG_05652
Microsporum gypseum
MGYG_05652
I
MCYG_06509
Arthroderma otae
MCYG_06509
I
MCYG_06509
Microsporum canis
MCYG_06509
I
H105_07224
Trichophyton soudanense
H105_07224
I
H102_07188
Trichophyton rubrum
H102_07188
I
H101_04838
Trichophyton interdigitale
H101_04838
I
H101_03578
Trichophyton interdigitale
H101_03578
I
EURHEDRAFT_408314
Aspergillus ruber
EURHEDRAFT_408314
I
CaO19.6817
Candida albicans
CaO19.6817
I
CaO19.14109
Candida albicans
CaO19.14109
I
NFIA_010470
Neosartorya fischeri
CADNFIAG00001085
I
ATEG_00855
Aspergillus terreus
CADATEAG00009880
I
CADANGAG00001307
Aspergillus niger
CADANGAG00001307
I
AFUA_1G14945
Aspergillus fumigatus
CADAFUAG00007115
I
CADAFLAG00001251
Aspergillus flavus
CADAFLAG00001251
I
ARB_07193
Arthroderma benhamiae
ARB_07193
I