LFY (Arabidopsis thaliana)
Leafy

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01698 (FLO_LFY) IPR002910 AT5G61850 T244679_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes transcriptional regulator that promotes the transition to flowering.Involved in floral meristem development. LFY is involved in the regulation of AP3 expression, and appears to bring the F-box protein UFO to the AP3 promoter. Amino acids 46-120 define a protein domain that mediates self-interaction.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LFY
M02692_2.00		 Arabidopsis thaliana
YWTKRACCRSYGGTYMAWR
YWTKRACCRSYGGTYMAWR		 SELEX
Mathelier et al.(2014)
MA0590.1		 (Direct) (Direct)
LFY
M10895_2.00		 Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$LFY_Q2		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G61850.1 Leafy 1 390
AT5G61850.2 Leafy 1 394

Links

Other Leafy family TFs
Other Arabidopsis thaliana TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LFY Arabidopsis lyrata Al_scaffold_0008_2690 I 0.988
Bostr.26833s0050 Boechera stricta Bostr.26833s0050 I 0.982
Thhalv10005606m.g Eutrema salsugineum Thhalv10005606m.g I 0.982
Carubv10028602m.g Capsella rubella Carubv10028602m.g I 0.976
Cagra.4553s0022 Capsella grandiflora Cagra.4553s0022 I 0.976
Bra029305 Brassica rapa Bra029305 I 0.970
Bo2g161690 Brassica oleracea Bo2g161690 I 0.970
Bo3g109270 Brassica oleracea Bo3g109270 I 0.970
Bra019619 Brassica rapa Bra019619 I 0.964
chr1.CM0094.750.nd Lotus japonicus chr1.CM0094.750.nd I 0.902
Gorai.001G053900 Gossypium raimondii Gorai.001G053900 I 0.899
Solyc03g118160.1 Solanum lycopersicum Solyc03g118160.1 I 0.893
cassava40548.m1 Manihot esculenta cassava40548.m1 I 0.893
TCM_014768 Theobroma cacao TCM_014768 I 0.893
GLYMA06G17170 Glycine max GLYMA06G17170 I 0.893
mgf013601m Mimulus guttatus mgf013601m I 0.887
30147.m014401 Ricinus communis 30147.m014401 I 0.887
Ciclev10033942m.g Citrus clementina Ciclev10033942m.g I 0.887
orange1.1g044766m.g Citrus sinensis orange1.1g044766m.g I 0.887
Ca_01386 Cicer arietinum Ca_01386 I 0.887
cassava19992.m1 Manihot esculenta cassava19992.m1 I 0.881
MTR_3g098560 Medicago truncatula MTR_3g098560 I 0.875
PRUPE_ppa006372mg Prunus persica PRUPE_ppa006372mg I 0.875
LFY Vitis vinifera VIT_17s0000g00150 I 0.875
Lus10022427.g Linum usitatissimum Lus10022427.g I 0.863
FL Populus trichocarpa POPTR_0015s11820 I 0.863
SapurV1A.2394s0010 Salix purpurea SapurV1A.2394s0010 I 0.863
GSMUA_Achr6G16390_001 Musa acuminata GSMUA_Achr6G16390_001 I 0.857
Cla019619 Citrullus lanatus Cla019619 I 0.857
Cucsa.156880 Cucumis sativus Cucsa.156880 I 0.857
Lus10016732.g Linum usitatissimum Lus10016732.g I 0.857
mgf020579m Mimulus guttatus mgf020579m I 0.845
GLYMA04G37900 Glycine max GLYMA04G37900 I 0.828
Pavir.Gb00795 Panicum virgatum Pavir.Gb00795 I 0.827
Si011756m.g Setaria italica Si011756m.g I 0.827
Sb06g027340 Sorghum bicolor Sb06g027340 I 0.827
Pavir.Ga00621 Panicum virgatum Pavir.Ga00621 I 0.827
Eucgr.K02192 Eucalyptus grandis Eucgr.K02192 I 0.821
GRMZM2G180190 Zea mays GRMZM2G180190 I 0.815
gene33406-v1.0-hybrid Fragaria vesca gene33406-v1.0-hybrid I 0.810
GRMZM2G098813 Zea mays GRMZM2G098813 I 0.804
OGLUM04G23830 Oryza glumaepatula OGLUM04G23830 I 0.804
OBART04G23870 Oryza barthii OBART04G23870 I 0.804
OSL Oryza indica BGIOSGA014428 I 0.804
OPUNC04G21410 Oryza punctata OPUNC04G21410 I 0.804
ONIVA04G23030 Oryza nivara ONIVA04G23030 I 0.804
FL Oryza sativa OS04G0598300 I 0.804
ORGLA04G0204600 Oryza glaberrima ORGLA04G0204600 I 0.804
ORUFI04G25610 Oryza rufipogon ORUFI04G25610 I 0.804
OMERI04G19760 Oryza meridionalis OMERI04G19760 I 0.804
OLONG_021167 Oryza longistaminata OLONG_021167 I 0.804
OB04G30790 Oryza brachyantha OB04G30790 I 0.798
Traes_2AL_83D0D0C3F Triticum aestivum Traes_2AL_83D0D0C3F I 0.798
Traes_2BL_8DEC0EFBF Triticum aestivum Traes_2BL_8DEC0EFBF I 0.798
BRADI5G20340 Brachypodium distachyon BRADI5G20340 I 0.786
Aquca_043_00044 Aquilegia coerulea Aquca_043_00044 I 0.780
AMTR_s00016p00083040 Amborella trichopoda AMTR_s00016p00083040 I 0.774
gene30683-v1.0-hybrid Fragaria vesca gene30683-v1.0-hybrid I 0.762
LPERR04G19570 Leersia perrieri LPERR04G19570 I 0.756
gene30750-v1.0-hybrid Fragaria vesca gene30750-v1.0-hybrid I 0.738
Pm024610 Prunus mume Pm024610 I 0.734
SELMODRAFT_85923 Selaginella moellendorffii SELMODRAFT_85923 I 0.724
gene30747-v1.0-hybrid Fragaria vesca gene30747-v1.0-hybrid I 0.720
evm.TU.supercontig_13.181 Carica papaya evm.TU.supercontig_13.181 I 0.719
estExt_fgenesh1_pg.C_740147 Physcomitrella patens estExt_fgenesh1_pg.C_740147 I 0.702