Bra032938 (Brassica rapa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bra032938 T245078_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.814 0.814
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.814 0.814
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra032938.1-P LOB 180 276

Links

Other LOB family TFs
Other Brassica rapa TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D 0.814
LBD24 Arabidopsis thaliana AT3G26660 I 0.814
Bo00285s360 Brassica oleracea Bo00285s360 I 0.948
Bo3g065910 Brassica oleracea Bo3g065910 I 0.804
Bo7g083780 Brassica oleracea Bo7g083780 I 0.825
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.794
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.825
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.804
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.794
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.701
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I 0.814
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I 0.835