Carubv10018979m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10018979m.g T246775_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.919 0.919
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.919 0.919
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10018979m LOB 5 103

Links

Other LOB family TFs
Other Capsella rubella TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.990
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.949
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.949
LBD23 Arabidopsis thaliana AT3G26620 D 0.919
LBD24 Arabidopsis thaliana AT3G26660 I 0.919
Bo3g065910 Brassica oleracea Bo3g065910 I 0.909
Bo7g083780 Brassica oleracea Bo7g083780 I 0.889
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I 0.889
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I 0.869
Bo00285s360 Brassica oleracea Bo00285s360 I 0.838
Bra032938 Brassica rapa Bra032938 I 0.794
cassava11118.m1 Manihot esculenta cassava11118.m1 I 0.727
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I 0.727
TCM_035123 Theobroma cacao TCM_035123 N 0.717
POPTR_0012s13910 Populus trichocarpa POPTR_0012s13910 I 0.707
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I 0.707
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.707
Bra025217 Brassica rapa Bra025217 I 0.705