POPTR_0012s13910 (Populus trichocarpa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 POPTR_0012s13910 T245895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.717 0.717
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0012s13910.1 LOB 5 103

Links

Other LOB family TFs
Other Populus trichocarpa TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D 0.717
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I 0.798
SapurV1A.0400s0200 Salix purpurea SapurV1A.0400s0200 I 0.960
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I 0.808
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.798
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I 0.788
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.707
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.707
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.727
cassava11118.m1 Manihot esculenta cassava11118.m1 I 0.848
LBD24 Arabidopsis thaliana AT3G26660 I 0.717
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.717
Bo00285s360 Brassica oleracea Bo00285s360 I 0.717
POPTR_0015s13870 Populus trichocarpa POPTR_0015s13870 N 0.939
SapurV1A.0068s0590 Salix purpurea SapurV1A.0068s0590 N 0.929
MDP0000288452 Malus domestica MDP0000288452 N 0.745
Gorai.009G123600 Gossypium raimondii Gorai.009G123600 N 0.788
Gorai.008G280400 Gossypium raimondii Gorai.008G280400 N 0.778
gene26806-v1.0-hybrid Fragaria vesca gene26806-v1.0-hybrid N 0.758
GLYMA14G02440 Glycine max GLYMA14G02440 N 0.707
MTR_5g093010 Medicago truncatula MTR_5g093010 N 0.727
MTR_7g028905 Medicago truncatula MTR_7g028905 N 0.727
VIT_16s0100g00440 Vitis vinifera VIT_16s0100g00440 N 0.758
PRUPE_ppa024504mg Prunus persica PRUPE_ppa024504mg N 0.788
mgf017470m Mimulus guttatus mgf017470m N 0.707
Cucsa.250990 Cucumis sativus Cucsa.250990 N 0.768
Cucsa.161230 Cucumis sativus Cucsa.161230 N 0.747
TCM_035123 Theobroma cacao TCM_035123 N 0.808
29613.m000372 Ricinus communis 29613.m000372 N 0.848
Pm016263 Prunus mume Pm016263 N 0.788
Ca_16884 Cicer arietinum Ca_16884 N 0.747