Sb01g046990 (Sorghum bicolor)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Sb01g046990 T245962_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD18
M06962_2.00 		Arabidopsis thaliana
SCGGRRAWHVHGSMRNNDN
NHNNYKSCDBDWTYYCCGS		 Dap-seq
OMalley et al.(2016)
LBD18_col_a 		0.758 0.758
LBD18
M06963_2.00 		Arabidopsis thaliana
CDBDWTTTMHGSHRN
NYDSCDKAAAWHVHG		 Dap-seq
OMalley et al.(2016)
LBD18_colamp_a 		0.758 0.758
LBD16
M00870_2.00 		Arabidopsis thaliana
DNHHYVCGG
CCGBRDDNH		 PBM
Franco-Zorrilla et al.(2014)
LBD16 		0.747 0.747
LBD30
M01066_2.00 		Arabidopsis thaliana
BVWWWHVNGG
CCNBDWWWBV		 PBM
Sullivan et al.(2014)
pTH7467 		0.747 0.747
LBD30
M01067_2.00 		Arabidopsis thaliana
VWWWNVNGGD
HCCNBNWWWB		 PBM
Sullivan et al.(2014)
pTH7616 		0.747 0.747
LBD16
M06958_2.00 		Arabidopsis thaliana
SCGGAAAWNVCGSMR
YKSCGBNWTTTCCGS		 Dap-seq
OMalley et al.(2016)
ASL18_col_a 		0.747 0.747
LBD16
M06959_2.00 		Arabidopsis thaliana
SCDBDWTTYVCGSHDN
NHDSCGBRAAWHVHGS		 Dap-seq
OMalley et al.(2016)
ASL18_colamp_a 		0.747 0.747
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g046990.1 LOB 7 106

Links

Other LOB family TFs
Other Sorghum bicolor TFs

367 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF8 Arabidopsis thaliana AT1G53170 D
RAP2-12 Arabidopsis thaliana AT1G53910 D
HRE1 Arabidopsis thaliana AT1G72360 D
ERF4 Arabidopsis thaliana AT3G15210 D
ERF091 Arabidopsis thaliana AT4G18450 D
AC206951.3_FG017 Zea mays AC206951.3_FG017 I
AMTR_s00017p00232330 Amborella trichopoda AMTR_s00017p00232330 I
BGIOSGA003364 Oryza indica BGIOSGA003364 I
BGIOSGA011328 Oryza indica BGIOSGA011328 I
BGIOSGA014134 Oryza indica BGIOSGA014134 I
BGIOSGA030816 Oryza indica BGIOSGA030816 I
BGIOSGA032849 Oryza indica BGIOSGA032849 I
Bo1g129710 Brassica oleracea Bo1g129710 I
Bo2g122260 Brassica oleracea Bo2g122260 I
Bo3g066710 Brassica oleracea Bo3g066710 I
Bo3g074840 Brassica oleracea Bo3g074840 I
Bo3g184310 Brassica oleracea Bo3g184310 I
Bo5g127380 Brassica oleracea Bo5g127380 I
Bo7g048170 Brassica oleracea Bo7g048170 I
Bra001588 Brassica rapa Bra001588 I
Bra001784 Brassica rapa Bra001784 I
Bra021594 Brassica rapa Bra021594 I
Bra027270 Brassica rapa Bra027270 I
Bra030095 Brassica rapa Bra030095 I
Bra030957 Brassica rapa Bra030957 I
Bra036016 Brassica rapa Bra036016 I
Bra039658 Brassica rapa Bra039658 I
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I
BRADI4G31040 Brachypodium distachyon BRADI4G31040 I
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I
F775_30714 Aegilops tauschii F775_30714 I
ATERF-8 Arabidopsis lyrata fgenesh2_kg.1__4394__AT1G53170.1 I
GLYMA02G46340 Glycine max GLYMA02G46340 I
GLYMA06G35710 Glycine max GLYMA06G35710 I
GLYMA08G43300 Glycine max GLYMA08G43300 I
GLYMA12G26836 Glycine max GLYMA12G26836 I
GLYMA12G35550 Glycine max GLYMA12G35550 I
GLYMA13G34920 Glycine max GLYMA13G34920 I
GLYMA14G02360 Glycine max GLYMA14G02360 I
GLYMA15G16260 Glycine max GLYMA15G16260 I
GLYMA18G10290 Glycine max GLYMA18G10290 I
GRMZM2G018984 Zea mays GRMZM2G018984 I
GRMZM2G020054 Zea mays GRMZM2G020054 I
GRMZM2G025062 Zea mays GRMZM2G025062 I
GRMZM2G050851 Zea mays GRMZM2G050851 I
GRMZM2G053503 Zea mays GRMZM2G053503 I
GRMZM2G079653 Zea mays GRMZM2G079653 I
GRMZM2G089995 Zea mays GRMZM2G089995 I
GRMZM2G114820 Zea mays GRMZM2G114820 I
GRMZM2G146028 Zea mays GRMZM2G146028 I
GRMZM2G148333 Zea mays GRMZM2G148333 I
GRMZM2G151542 Zea mays GRMZM2G151542 I
GRMZM2G169382 Zea mays GRMZM2G169382 I
GRMZM2G175525 Zea mays GRMZM2G175525 I
GRMZM2G328197 Zea mays GRMZM2G328197 I
GRMZM2G429378 Zea mays GRMZM2G429378 I
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I
GSMUA_Achr10G31090_001 Musa acuminata GSMUA_Achr10G31090_001 I
GSMUA_Achr11G15810_001 Musa acuminata GSMUA_Achr11G15810_001 I
GSMUA_Achr1G25890_001 Musa acuminata GSMUA_Achr1G25890_001 I
GSMUA_Achr6G18020_001 Musa acuminata GSMUA_Achr6G18020_001 I
GSMUA_Achr9G05260_001 Musa acuminata GSMUA_Achr9G05260_001 I
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I
LPERR02G05920 Leersia perrieri LPERR02G05920 I
LPERR03G05400 Leersia perrieri LPERR03G05400 I
LPERR09G08060 Leersia perrieri LPERR09G08060 I
MLOC_38561 Hordeum vulgare MLOC_38561 I
MTR_2g078680 Medicago truncatula MTR_2g078680 I
MTR_3g053690 Medicago truncatula MTR_3g053690 I
OB07G27820 Oryza brachyantha OB07G27820 I
OB09G17960 Oryza brachyantha OB09G17960 I
OBART03G06060 Oryza barthii OBART03G06060 I
OBART09G11390 Oryza barthii OBART09G11390 I
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I
OGLUM03G06060 Oryza glumaepatula OGLUM03G06060 I
OGLUM04G28860 Oryza glumaepatula OGLUM04G28860 I
OGLUM09G11780 Oryza glumaepatula OGLUM09G11780 I
OGLUM10G08400 Oryza glumaepatula OGLUM10G08400 I
OLONG_007389 Oryza longistaminata OLONG_007389 I
OMERI02G07840 Oryza meridionalis OMERI02G07840 I
OMERI03G05890 Oryza meridionalis OMERI03G05890 I
OMERI04G24480 Oryza meridionalis OMERI04G24480 I
OMERI09G08870 Oryza meridionalis OMERI09G08870 I
OMERI10G05820 Oryza meridionalis OMERI10G05820 I
OMERI12G11270 Oryza meridionalis OMERI12G11270 I
ONIVA03G06080 Oryza nivara ONIVA03G06080 I
ONIVA04G27460 Oryza nivara ONIVA04G27460 I
ONIVA09G11170 Oryza nivara ONIVA09G11170 I
ONIVA10G08250 Oryza nivara ONIVA10G08250 I
OPUNC01G12900 Oryza punctata OPUNC01G12900 I
OPUNC02G05940 Oryza punctata OPUNC02G05940 I
OPUNC09G09870 Oryza punctata OPUNC09G09870 I
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I
ORGLA03G0058500 Oryza glaberrima ORGLA03G0058500 I
ORGLA09G0085500 Oryza glaberrima ORGLA09G0085500 I
ORGLA10G0072500 Oryza glaberrima ORGLA10G0072500 I
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I
ORUFI03G05890 Oryza rufipogon ORUFI03G05890 I
ORUFI04G30650 Oryza rufipogon ORUFI04G30650 I
ORUFI09G12180 Oryza rufipogon ORUFI09G12180 I
OS01G0313300 Oryza sativa OS01G0313300 I
OS03G0183000 Oryza sativa OS03G0183000 I
OS04G0669200 Oryza sativa OS04G0669200 I
OS09G0434500 Oryza sativa OS09G0434500 I
OS10G0390800 Oryza sativa OS10G0390800 I
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I
PGSC0003DMG400028853 Solanum tuberosum PGSC0003DMG400028853 I
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I
POPTR_0005s24470 Populus trichocarpa POPTR_0005s24470 I
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I
PRUPE_ppa010982mg Prunus persica PRUPE_ppa010982mg I
Sb02g025530 Sorghum bicolor Sb02g025530 I
Sb02g042760 Sorghum bicolor Sb02g042760 I
Sb03g012890 Sorghum bicolor Sb03g012890 I
Sb04g006080 Sorghum bicolor Sb04g006080 I
Sb04g035160 Sorghum bicolor Sb04g035160 I
Sb07g006190 Sorghum bicolor Sb07g006190 I
Sb07g006195 Sorghum bicolor Sb07g006195 I
Sb07g006200 Sorghum bicolor Sb07g006200 I
Sb07g006210 Sorghum bicolor Sb07g006210 I
RAP2.12 Arabidopsis lyrata scaffold_105235.1 I
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I
SELMODRAFT_73164 Selaginella moellendorffii SELMODRAFT_73164 I
SELMODRAFT_73169 Selaginella moellendorffii SELMODRAFT_73169 I
Si002845m.g Setaria italica Si002845m.g I
Si014469m.g Setaria italica Si014469m.g I
Si014474m.g Setaria italica Si014474m.g I
Si023330m.g Setaria italica Si023330m.g I
Si030088m.g Setaria italica Si030088m.g I
Si030514m.g Setaria italica Si030514m.g I
Si031079m.g Setaria italica Si031079m.g I
Si036118m.g Setaria italica Si036118m.g I
Si036615m.g Setaria italica Si036615m.g I
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I
Solyc12g049560.1 Solanum lycopersicum Solyc12g049560.1 I
TCM_031608 Theobroma cacao TCM_031608 I
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I
Traes_5AL_14D9A9844 Triticum aestivum Traes_5AL_14D9A9844 I
Traes_5BL_7F84602F3 Triticum aestivum Traes_5BL_7F84602F3 I
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I
Traes_5DL_26F3B188A Triticum aestivum Traes_5DL_26F3B188A I
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I
TRIUR3_20682 Triticum urartu TRIUR3_20682 I
TRIUR3_28710 Triticum urartu TRIUR3_28710 I
VIT_19s0014g02240 Vitis vinifera VIT_19s0014g02240 I
Ca_20544 Cicer arietinum Ca_20544 I
Ca_22534 Cicer arietinum Ca_22534 I
Cla023722 Citrullus lanatus Cla023722 I
Pm011391 Prunus mume Pm011391 I
27904.m000217 Ricinus communis 27904.m000217 I
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I
cassava42230.valid.m1 Manihot esculenta cassava42230.valid.m1 I
cassava42231.valid.m1 Manihot esculenta cassava42231.valid.m1 I
Cucsa.101370 Cucumis sativus Cucsa.101370 I
Cucsa.122930 Cucumis sativus Cucsa.122930 I
Cucsa.126880 Cucumis sativus Cucsa.126880 I
mgf009667m Mimulus guttatus mgf009667m I
mgf010035m Mimulus guttatus mgf010035m I
Aquca_023_00168 Aquilegia coerulea Aquca_023_00168 I
Aquca_076_00008 Aquilegia coerulea Aquca_076_00008 I
Bostr.10273s0115 Boechera stricta Bostr.10273s0115 I
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I
Bostr.7128s0090 Boechera stricta Bostr.7128s0090 I
Cagra.0769s0008 Capsella grandiflora Cagra.0769s0008 I
Cagra.0897s0005 Capsella grandiflora Cagra.0897s0005 I
Cagra.1013s0062 Capsella grandiflora Cagra.1013s0062 I
Cagra.1472s0014 Capsella grandiflora Cagra.1472s0014 I
Carubv10009538m.g Capsella rubella Carubv10009538m.g I
Carubv10010374m.g Capsella rubella Carubv10010374m.g I
Carubv10011371m.g Capsella rubella Carubv10011371m.g I
Carubv10014552m.g Capsella rubella Carubv10014552m.g I
Carubv10020812m.g Capsella rubella Carubv10020812m.g I
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I
Ciclev10025816m.g Citrus clementina Ciclev10025816m.g I
Eucgr.F01164 Eucalyptus grandis Eucgr.F01164 I
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I
Gorai.002G067600 Gossypium raimondii Gorai.002G067600 I
Gorai.007G280800 Gossypium raimondii Gorai.007G280800 I
Gorai.007G280900 Gossypium raimondii Gorai.007G280900 I
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I
MDP0000324718 Malus domestica MDP0000324718 I
orange1.1g020391m.g Citrus sinensis orange1.1g020391m.g I
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I
Pavir.Bb02257 Panicum virgatum Pavir.Bb02257 I
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I
Pavir.Db02131 Panicum virgatum Pavir.Db02131 I
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I
Pavir.Fa01728 Panicum virgatum Pavir.Fa01728 I
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I
Pavir.Fb00951 Panicum virgatum Pavir.Fb00951 I
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I
Pavir.Fb01507 Panicum virgatum Pavir.Fb01507 I
Pavir.Ga00187 Panicum virgatum Pavir.Ga00187 I
Pavir.Gb00092 Panicum virgatum Pavir.Gb00092 I
Pavir.Ib00526 Panicum virgatum Pavir.Ib00526 I
Pavir.Ib02796 Panicum virgatum Pavir.Ib02796 I
Pavir.J01991 Panicum virgatum Pavir.J01991 I
Pavir.J08480 Panicum virgatum Pavir.J08480 I
Pavir.J13096 Panicum virgatum Pavir.J13096 I
Pavir.J17283 Panicum virgatum Pavir.J17283 I
Pavir.J26885 Panicum virgatum Pavir.J26885 I
Pavir.J34139 Panicum virgatum Pavir.J34139 I
SapurV1A.0207s0200 Salix purpurea SapurV1A.0207s0200 I
SapurV1A.0233s0360 Salix purpurea SapurV1A.0233s0360 I
SapurV1A.1244s0010 Salix purpurea SapurV1A.1244s0010 I
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I
SapurV1A.4312s0010 Salix purpurea SapurV1A.4312s0010 I
Thhalv10003431m.g Eutrema salsugineum Thhalv10003431m.g I
Thhalv10011606m.g Eutrema salsugineum Thhalv10011606m.g I
Thhalv10011796m.g Eutrema salsugineum Thhalv10011796m.g I
Thhalv10018945m.g Eutrema salsugineum Thhalv10018945m.g I
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I
Thhalv10021456m.g Eutrema salsugineum Thhalv10021456m.g I
chr1.CM0442.200.nd Lotus japonicus chr1.CM0442.200.nd I
LjT01F24.60.nd Lotus japonicus LjT01F24.60.nd I
PDK_20s1440861g004 Phoenix dactylifera PDK_20s1440861g004 I
BGIOSGA012597 Oryza indica BGIOSGA012597 N
BGIOSGA023726 Oryza indica BGIOSGA023726 N
GRMZM2G125460 Zea mays GRMZM2G125460 N
LPERR03G05410 Leersia perrieri LPERR03G05410 N
LPERR03G14670 Leersia perrieri LPERR03G14670 N
OBART07G26160 Oryza barthii OBART07G26160 N
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N
OMERI03G15020 Oryza meridionalis OMERI03G15020 N
OMERI07G22780 Oryza meridionalis OMERI07G22780 N
ONIVA03G06100 Oryza nivara ONIVA03G06100 N
ONIVA03G17860 Oryza nivara ONIVA03G17860 N
ONIVA07G25780 Oryza nivara ONIVA07G25780 N
OPUNC03G16250 Oryza punctata OPUNC03G16250 N
OPUNC07G24590 Oryza punctata OPUNC07G24590 N
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N
OS03G0341000 Oryza sativa OS03G0341000 N
OS07G0674800 Oryza sativa OS07G0674800 N
Sb01g045050 Sorghum bicolor Sb01g045050 N
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N
Pavir.J12680 Panicum virgatum Pavir.J12680 N