POPTR_0010s23970 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0010s23970 T249678_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.881 0.667
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.881 0.667
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.881 0.667
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.838 0.639
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23970.1 MADF 79 159

Links

Other MADF family TFs
Other Populus trichocarpa TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF79 Homo sapiens ENSG00000196152 D
ENSNLEG00000017444 Nomascus leucogenys ENSNLEG00000017444 I
ENSP00000362446 Macaca fascicularis ENSP00000362446 I
ENSBTAP00000032740-D1 Bos grunniens ENSBTAP00000032740-D1 I
ZNF79 Vicugna pacos ENSVPAG00000005120 I
ZNF79 Tursiops truncatus ENSTTRG00000015699 I
ZNF79 Tupaia belangeri ENSTBEG00000005767 I
ZNF79 Sus scrofa ENSSSCG00000005611 I
ZNF79 Pteropus vampyrus ENSPVAG00000000923 I
ZNF79 Pan troglodytes ENSPTRG00000021388 I
ENSPPYG00000019621 Pongo abelii ENSPPYG00000019621 I
ZNF79 Procavia capensis ENSPCAG00000007422 I
ENSPANG00000024822 Papio anubis ENSPANG00000024822 I
ZNF79 Otolemur garnettii ENSOGAG00000000595 I
ENSOARG00000012092 Ovis aries ENSOARG00000012092 I
ZNF79 Bos taurus ENSBTAG00000023885 I
ENSMPUG00000013847 Mustela putorius furo ENSMPUG00000013847 I
ZNF79 Monodelphis domestica ENSMODG00000011141 I
ZNF79 Macaca mulatta ENSMMUG00000021760 I
ZNF79 Microcebus murinus ENSMICG00000002323 I
ZNF79 Gorilla gorilla ENSGGOG00000000647 I
ZNF79 Equus caballus ENSECAG00000009109 I
ZNF79 Dasypus novemcinctus ENSDNOG00000047558 I
ENSCSAG00000013717 Chlorocebus sabaeus ENSCSAG00000013717 I
ZNF79 Callithrix jacchus ENSCJAG00000018073 I
ZNF79 Choloepus hoffmanni ENSCHOG00000006736 I
ZNF79 Canis familiaris ENSCAFG00000031097 I