POPTR_0010s23970 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0010s23970 T249678_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.881 0.667
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.881 0.667
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.881 0.667
PK04914.1
M01262_2.00 		Cannabis sativa
DCCGTYAN
NTRACGGH		 PBM
Lambert et al.(2019)
pTH10098 		0.838 0.639
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s23970.1 MADF 79 159

Links

Other MADF family TFs
Other Populus trichocarpa TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.968
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.968
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.968
28077.m000081 Ricinus communis 28077.m000081 I 0.946
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.945
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.942
MDP0000201016 Malus domestica MDP0000201016 I 0.937
MDP0000399495 Malus domestica MDP0000399495 I 0.937
MDP0000415733 Malus domestica MDP0000415733 I 0.937
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.933
TCM_043551 Theobroma cacao TCM_043551 I 0.926
F775_31501 Aegilops tauschii F775_31501 I 0.912
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.912
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.912
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.912
mgf008067m Mimulus guttatus mgf008067m I 0.907
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.905
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.904
Si009787m.g Setaria italica Si009787m.g I 0.904
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.904
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.901
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.900
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.900
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.900
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.900
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.900
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.899
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.899
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.897
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.896
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.896
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.890
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.889
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.889
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.889
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.886
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.886
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.886
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.886
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.886
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.885
Ca_20148 Cicer arietinum Ca_20148 I 0.885
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.885
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.885
OB04G18670 Oryza brachyantha OB04G18670 I 0.883
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.881
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.881
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.881
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.881
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.881
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.880
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.879
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.876
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.871
Cla018015 Citrullus lanatus Cla018015 I 0.866
29815.m000504 Ricinus communis 29815.m000504 I 0.866
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.866
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.866
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.864
Bo5g137800 Brassica oleracea Bo5g137800 I 0.860
Bra029812 Brassica rapa Bra029812 I 0.860
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.858
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.853
Pm026265 Prunus mume Pm026265 I 0.853
PK04914.1 Cannabis sativa PK04914.1 D 0.838
TCM_022397 Theobroma cacao TCM_022397 I 0.834