Si009787m.g (Setaria italica)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Si009787m.g T249811_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.847 0.611
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.847 0.611
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.847 0.611
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si009787m MADF 142 220
Si009844m MADF 142 220
Si009930m MADF 142 220
Si010015m MADF 142 220
Si010138m MADF 142 220

Links

Other MADF family TFs
Other Setaria italica TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.970
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.965
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.964
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.949
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.943
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.939
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.936
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.934
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.925
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.925
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.925
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.925
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.924
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.924
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.924
OB04G18670 Oryza brachyantha OB04G18670 I 0.923
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.921
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.921
F775_31501 Aegilops tauschii F775_31501 I 0.915
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.915
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.904
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.904
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.904
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.904
28077.m000081 Ricinus communis 28077.m000081 I 0.896
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.884
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.882
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.880
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.873
Bo5g137800 Brassica oleracea Bo5g137800 I 0.870
Bra029812 Brassica rapa Bra029812 I 0.870
TCM_022397 Theobroma cacao TCM_022397 I 0.870
MDP0000201016 Malus domestica MDP0000201016 I 0.868
MDP0000399495 Malus domestica MDP0000399495 I 0.868
MDP0000415733 Malus domestica MDP0000415733 I 0.868
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.864
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.857
mgf008067m Mimulus guttatus mgf008067m I 0.853
TCM_043551 Theobroma cacao TCM_043551 I 0.848
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.847
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.847
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.847
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.847
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.847
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.847
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.847
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.841
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.841
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.841
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.838
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.838
Cla018015 Citrullus lanatus Cla018015 I 0.838
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.838
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.829
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.826
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.826
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.826
Ca_20148 Cicer arietinum Ca_20148 I 0.826
29815.m000504 Ricinus communis 29815.m000504 I 0.826
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.826
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.826
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.826
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.812
Pm026265 Prunus mume Pm026265 I 0.812