Pavir.J13370 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.J13370 T250826_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G10030
M01258_2.00 		Arabidopsis thaliana
NRMCGTTAWNN
NNWTAACGKYN		 PBM
Lambert et al.(2019)
pTH11538 		0.839 0.583
AT3G10030
M06971_2.00 		Arabidopsis thaliana
HRHCKCCGTTANND
HNNTAACGGMGDYD		 Dap-seq
OMalley et al.(2016)
AT3G10030_col_a 		0.839 0.583
AT3G10030
M06972_2.00 		Arabidopsis thaliana
HWRHMKCCGTTAAHD
HDTTAACGGMKDYWD		 Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a 		0.839 0.583
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J13370.1.p MADF 131 209

Links

Other MADF family TFs
Other Panicum virgatum TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.965
Si009787m.g Setaria italica Si009787m.g I 0.965
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.962
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.946
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.940
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.938
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.937
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.935
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.928
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.928
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.928
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.928
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.927
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.927
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.926
OB04G18670 Oryza brachyantha OB04G18670 I 0.926
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.919
F775_31501 Aegilops tauschii F775_31501 I 0.919
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.917
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.915
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.897
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.897
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.897
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.897
28077.m000081 Ricinus communis 28077.m000081 I 0.888
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.878
TCM_022397 Theobroma cacao TCM_022397 I 0.875
Bo5g137800 Brassica oleracea Bo5g137800 I 0.875
Bra029812 Brassica rapa Bra029812 I 0.875
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.873
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.871
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.865
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.864
MDP0000415733 Malus domestica MDP0000415733 I 0.859
MDP0000399495 Malus domestica MDP0000399495 I 0.859
MDP0000201016 Malus domestica MDP0000201016 I 0.859
mgf008067m Mimulus guttatus mgf008067m I 0.859
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.853
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.847
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.847
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.844
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.844
Cla018015 Citrullus lanatus Cla018015 I 0.844
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.844
TCM_043551 Theobroma cacao TCM_043551 I 0.840
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.839
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.839
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.839
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.839
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.839
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.839
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.835
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.832
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.832
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.832
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.832
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.830
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.827
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.819
Pm026265 Prunus mume Pm026265 I 0.819
Ca_20148 Cicer arietinum Ca_20148 I 0.817
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.817
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.817
29815.m000504 Ricinus communis 29815.m000504 I 0.817