Carubv10001830m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10001830m.g T250618_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.875 0.806
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.875 0.806
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001830m MADF 33 107

Links

Other MADF family TFs
Other Capsella rubella TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NCU01994 Neurospora crassa NCU01994 D 0.000
ANIA_04562 Aspergillus nidulans CADANIAG00005876 D 0.000
SNOG_00166 Phaeosphaeria nodorum SNOG_00166 I 0.000
AMAG_08133 Allomyces macrogynus AMAG_08133 I 0.000
PTT_08596 Pyrenophora teres PTT_08596 I 0.000
PV04_07297 Capronia semiimmersa PV04_07297 I 0.000
PV06_05518 Exophiala oligosperma PV06_05518 I 0.000
PV07_10932 Cladophialophora immunda PV07_10932 I 0.000
PV09_01442 Verruconis gallopava PV09_01442 I 0.000
PV10_06310 Exophiala mesophila PV10_06310 I 0.000
PVAR5_0698 Byssochlamys spectabilis PVAR5_0698 I 0.000
S40285_07743 Stachybotrys chlorohalonata S40285_07743 I 0.000
S40288_03446 Stachybotrys chartarum S40288_03446 I 0.000
SAPIO_CDS6640 Scedosporium apiospermum SAPIO_CDS6640 I 0.000
SETTUDRAFT_111603 Setosphaeria turcica SETTUDRAFT_111603 I 0.000
SMAC_05437 Sordaria macrospora SMAC_05437 I 0.000
PTRG_07150 Pyrenophora triticirepentis PTRG_07150 I 0.000
UCRNP2_115 Neofusicoccum parvum UCRNP2_115 I 0.000
Z517_09948 Fonsecaea pedrosoi Z517_09948 I 0.000
Z518_09068 Rhinocladiella mackenziei Z518_09068 I 0.000
Z519_07376 Cladophialophora bantiana Z519_07376 I 0.000
estExt_fgenesh3_kg.C_20222 Neurospora discreta estExt_fgenesh3_kg.C_20222 I 0.000
estExt_fgeneshPB_pg.C_10616 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_10616 I 0.000
estExt_Genewise1Plus.C_40021 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_40021 I 0.000
fgeneshMC_pg.2_#_504 Mucor circinelloides fgeneshMC_pg.2_#_504 I 0.000
AB08968.1 Alternaria brassicicola AB08968.1 I 0.000
e_gw1.00771.352.1 Aspergillus carbonarius e_gw1.00771.352.1 I 0.000
CANTEDRAFT_114901 Candida tenuis CANTEDRAFT_114901 I 0.000
AMAG_18789 Allomyces macrogynus AMAG_18789 I 0.000
RO3G_00724 Rhizopus oryzae RO3G_00724 I 0.000
RO3G_00882 Rhizopus oryzae RO3G_00882 I 0.000
RO3G_11752 Rhizopus oryzae RO3G_11752 I 0.000
SNOG_00166 Stagonospora nodorum SNOG_00166 I 0.000
A1O5_02846 Cladophialophora psammophila A1O5_02846 I 0.000
A1O7_06866 Cladophialophora yegresii A1O7_06866 I 0.000
AFUA_2G02540 Aspergillus fumigatus CADAFUAG00003598 I 0.000
CADANGAG00005877 Aspergillus niger CADANGAG00005877 I 0.000
ATEG_06925 Aspergillus terreus CADATEAG00003197 I 0.000
PDE_05394 Penicillium oxalicum PDE_05394 I 0.000
CGGC5_11283 Colletotrichum gloeosporioides CGGC5_11283 I 0.000
COCC4DRAFT_125759 Bipolaris maydis COCC4DRAFT_125759 I 0.000
COCCADRAFT_29461 Bipolaris zeicola COCCADRAFT_29461 I 0.000
COCMIDRAFT_108054 Bipolaris oryzae COCMIDRAFT_108054 I 0.000
COCSADRAFT_86485 Bipolaris sorokiniana COCSADRAFT_86485 I 0.000
COCVIDRAFT_20419 Bipolaris victoriae COCVIDRAFT_20419 I 0.000
COCVIDRAFT_30018 Bipolaris victoriae COCVIDRAFT_30018 I 0.000
EURHEDRAFT_409443 Aspergillus ruber EURHEDRAFT_409443 I 0.000
G647_03229 Cladophialophora carrionii G647_03229 I 0.000
GLOINDRAFT_120758 Rhizophagus irregularis GLOINDRAFT_120758 I 0.000
HMPREF1541_10554 Cyphellophora europaea HMPREF1541_10554 I 0.000
LEMA_P113690.1 Leptosphaeria maculans LEMA_P113690.1 I 0.000
NEUTE1DRAFT_89466 Neurospora tetrasperma NEUTE1DRAFT_89466 I 0.000
e_gw1.18.123.1 Phycomyces blakesleeanus e_gw1.18.123.1 N 0.000
fgeneshMC_pg.2_#_1100 Mucor circinelloides fgeneshMC_pg.2_#_1100 N 0.000
fgeneshMC_pg.8_#_258 Mucor circinelloides fgeneshMC_pg.8_#_258 N 0.000