AT5G05550 (Arabidopsis thaliana)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AT5G05550 T247890_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00		 Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a		 (Direct) (Direct)
AT5G05550
M06979_2.00		 Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G05550.1 MADF 34 108
AT5G05550.2 MADF 34 108
AT5G05550.3 MADF 34 108

Links

Other MADF family TFs
Other Arabidopsis thaliana TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra034866 Brassica rapa Bra034866 I 0.947
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.934
Bra034165 Brassica rapa Bra034165 I 0.914
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.901
Bo5g136850 Brassica oleracea Bo5g136850 I 0.876
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.876
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.875
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.875
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.874
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.874
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.874
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.848
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.845
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.838
Bo9g177060 Brassica oleracea Bo9g177060 I 0.837
Bra009119 Brassica rapa Bra009119 I 0.837
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.826
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.815
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.813