Bostr.13129s0416 (Boechera stricta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Bostr.13129s0416 T250582_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.934 0.881
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.934 0.881
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.13129s0416.1.p MADF 35 109

Links

Other MADF family TFs
Other Boechera stricta TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra034866 Brassica rapa Bra034866 I 0.946
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.934
Bra034165 Brassica rapa Bra034165 I 0.911
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.908
Bo5g136850 Brassica oleracea Bo5g136850 I 0.885
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.885
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.884
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.884
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.884
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.858
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.856
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.855
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.847
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.840
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.838
Bo9g177060 Brassica oleracea Bo9g177060 I 0.837
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.828
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.825
29814.m000741 Ricinus communis 29814.m000741 I 0.818
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.816
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.816
MDP0000097759 Malus domestica MDP0000097759 N 0.815