Bra034165 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra034165 T248031_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.914 0.727
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.914 0.727
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034165.1-P MADF 35 108

Links

Other MADF family TFs
Other Brassica rapa TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra034866 Brassica rapa Bra034866 I 0.947
Bo5g136850 Brassica oleracea Bo5g136850 I 0.944
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.944
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.943
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.943
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.943
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.932
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.918
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.914
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.911
MDP0000097759 Malus domestica MDP0000097759 N 0.898
29814.m000741 Ricinus communis 29814.m000741 I 0.890
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.889
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.889
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.889
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.885
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.883
Bo9g177060 Brassica oleracea Bo9g177060 I 0.880
MDP0000943251 Malus domestica MDP0000943251 N 0.876
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.873
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.873
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.872
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.872
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.863
Bra009119 Brassica rapa Bra009119 I 0.859
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.852
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.849
Si010246m.g Setaria italica Si010246m.g N 0.843
TCM_042467 Theobroma cacao TCM_042467 N 0.841
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.836
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.834
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.834
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.833
mgf006505m Mimulus guttatus mgf006505m I 0.831
mgf000047m Mimulus guttatus mgf000047m I 0.824
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.818
Sb06g017920 Sorghum bicolor Sb06g017920 N 0.818
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.817
Bra007407 Brassica rapa Bra007407 I 0.816
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.815
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.812