PGSC0003DMG400030023 (Solanum tuberosum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 PGSC0003DMG400030023 T249628_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.826 0.642
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400077198 MADF 33 106
PGSC0003DMT400077199 MADF 33 106

Links

Other MADF family TFs
Other Solanum tuberosum TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.971
MDP0000097759 Malus domestica MDP0000097759 N 0.948
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.947
29814.m000741 Ricinus communis 29814.m000741 I 0.941
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.941
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.940
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.940
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.939
MDP0000943251 Malus domestica MDP0000943251 N 0.936
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.933
TCM_042467 Theobroma cacao TCM_042467 N 0.924
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.920
MDP0000281471 Malus domestica MDP0000281471 I 0.917
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.916
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.916
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.907
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.907
Pm013209 Prunus mume Pm013209 I 0.907
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.907
MDP0000255104 Malus domestica MDP0000255104 I 0.907
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.901
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.896
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.891
mgf006505m Mimulus guttatus mgf006505m I 0.890
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.881
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.880
Bo5g136850 Brassica oleracea Bo5g136850 I 0.880
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.880
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.880
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.880
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.873
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.873
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.873
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.873
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.873
Bra034165 Brassica rapa Bra034165 I 0.872
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.864
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.864
PK20477.1 Cannabis sativa PK20477.1 N 0.863
mgf000047m Mimulus guttatus mgf000047m I 0.861
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.851
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.847
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.847
Cla015773 Citrullus lanatus Cla015773 I 0.842
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.842
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.842
Bo9g177060 Brassica oleracea Bo9g177060 I 0.837
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.837
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.835
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.835
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.830
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.830
Bra034866 Brassica rapa Bra034866 I 0.829
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.828
TCM_029209 Theobroma cacao TCM_029209 I 0.827
29727.m000472 Ricinus communis 29727.m000472 I 0.827
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.827
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.827
PK22475.1 Cannabis sativa PK22475.1 N 0.827
ASIL2 Arabidopsis thaliana AT3G14180 D 0.826
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.826
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.826
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.826
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.826
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.826
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.826
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.825
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.824
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.823
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.820
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.814