Bo5g136850 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo5g136850 T247987_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.876 0.701
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.876 0.701
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g136850.1 MADF 42 114

Links

Other MADF family TFs
Other Brassica oleracea TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.971
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.971
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.971
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.971
Bra034165 Brassica rapa Bra034165 I 0.944
Bo9g177060 Brassica oleracea Bo9g177060 I 0.937
Bra009119 Brassica rapa Bra009119 I 0.925
Bra034866 Brassica rapa Bra034866 I 0.923
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.922
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.905
MDP0000097759 Malus domestica MDP0000097759 N 0.905
29814.m000741 Ricinus communis 29814.m000741 I 0.897
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.896
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.896
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.896
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.894
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.892
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.885
MDP0000943251 Malus domestica MDP0000943251 N 0.884
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.881
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.881
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.880
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.880
Si010246m.g Setaria italica Si010246m.g N 0.878
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.876
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.871
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.871
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.871
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.868
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.861
Sb06g017920 Sorghum bicolor Sb06g017920 N 0.857
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.852
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.844
TCM_042467 Theobroma cacao TCM_042467 N 0.835
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.833
mgf006505m Mimulus guttatus mgf006505m I 0.825
mgf000047m Mimulus guttatus mgf000047m I 0.818
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.817
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.816