Bra009119 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra009119 T248016_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.837 0.721
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.837 0.721
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra009119.1-P MADF 42 115

Links

Other MADF family TFs
Other Brassica rapa TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g177060 Brassica oleracea Bo9g177060 I 0.966
Bo5g136850 Brassica oleracea Bo5g136850 I 0.925
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.925
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.924
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.924
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.924
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.871
Bra034165 Brassica rapa Bra034165 I 0.859
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.843
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.837
29814.m000741 Ricinus communis 29814.m000741 I 0.833
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.832
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.832
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.832
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.832
MDP0000097759 Malus domestica MDP0000097759 N 0.831
Bra034866 Brassica rapa Bra034866 I 0.828
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.827
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.826