Bra034866 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra034866 T248032_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.947 0.791
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.947 0.791
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034866.1-P MADF 35 109

Links

Other MADF family TFs
Other Brassica rapa TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.947
Bra034165 Brassica rapa Bra034165 I 0.947
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.946
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.939
Bo5g136850 Brassica oleracea Bo5g136850 I 0.923
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.923
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.922
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.922
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.922
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.896
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.894
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.872
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.870
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.867
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.866
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.866
29814.m000741 Ricinus communis 29814.m000741 I 0.864
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.863
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.863
MDP0000097759 Malus domestica MDP0000097759 N 0.862
Bo9g177060 Brassica oleracea Bo9g177060 I 0.853
TCM_042467 Theobroma cacao TCM_042467 N 0.851
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.845
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.845
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.844
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.844
Bra007407 Brassica rapa Bra007407 I 0.840
MDP0000943251 Malus domestica MDP0000943251 N 0.834
mgf006505m Mimulus guttatus mgf006505m I 0.831
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.829
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.829
Bra009119 Brassica rapa Bra009119 I 0.828
mgf000047m Mimulus guttatus mgf000047m I 0.824
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.818
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.817
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.815
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.813