gene29666-v1.0-hybrid (Fragaria vesca)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 gene29666-v1.0-hybrid T250695_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.937 0.754
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.937 0.754
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna29666.1-v1.0-hybrid MADF 44 121

Links

Other MADF family TFs
Other Fragaria vesca TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000301451 Malus domestica MDP0000301451 I 0.967
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.961
PK27986.1 Cannabis sativa PK27986.1 I 0.961
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.958
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.954
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.950
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.950
Ca_00394 Cicer arietinum Ca_00394 I 0.950
TCM_029695 Theobroma cacao TCM_029695 I 0.949
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.949
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.947
Bo6g075950 Brassica oleracea Bo6g075950 I 0.939
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.939
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.939
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.937
Bra003346 Brassica rapa Bra003346 I 0.937
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.937
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.937
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.937
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.936
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.933
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.929
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.929
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.929
Cla009854 Citrullus lanatus Cla009854 I 0.928
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.922
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.918
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.918
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.911
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.908
Bra007407 Brassica rapa Bra007407 I 0.907
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.902
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.900
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.899
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.898
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.898
29900.m001628 Ricinus communis 29900.m001628 I 0.892
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.892
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.892
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.888
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.887
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.886
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.884
Ca_19877 Cicer arietinum Ca_19877 I 0.882
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.878
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.878
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.877
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.867
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.860
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.860
OBART05G25610 Oryza barthii OBART05G25610 I 0.860
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.860
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.860
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.860
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.860
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.860
OS05G0560600 Oryza sativa OS05G0560600 I 0.860
Cla019967 Citrullus lanatus Cla019967 I 0.858
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.858
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.858
mgf006505m Mimulus guttatus mgf006505m I 0.858
mgf000047m Mimulus guttatus mgf000047m I 0.852
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.847
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.846
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.846
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.846
Si022565m.g Setaria italica Si022565m.g I 0.846
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.846
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.846
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.845
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.841
TCM_042467 Theobroma cacao TCM_042467 N 0.840
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.834
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.831
Cla002288 Citrullus lanatus Cla002288 I 0.827
29814.m000741 Ricinus communis 29814.m000741 I 0.824
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.824
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.822
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.822
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.822
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.821
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.820
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.819
Bra034866 Brassica rapa Bra034866 I 0.818