PK27986.1 (Cannabis sativa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 PK27986.1 T251181_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.925 0.708
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.925 0.708
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK27986.1 MADF 44 124

Links

Other MADF family TFs
Other Cannabis sativa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.968
MDP0000301451 Malus domestica MDP0000301451 I 0.965
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.963
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.963
Ca_00394 Cicer arietinum Ca_00394 I 0.963
TCM_029695 Theobroma cacao TCM_029695 I 0.962
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.962
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.961
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.960
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.951
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.951
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.951
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.949
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.943
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.943
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.942
Cla009854 Citrullus lanatus Cla009854 I 0.942
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.935
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.925
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.925
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.925
Bo6g075950 Brassica oleracea Bo6g075950 I 0.924
Bra003346 Brassica rapa Bra003346 I 0.924
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.924
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.922
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.917
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.912
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.902
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.902
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.894
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.892
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.892
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.892
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.891
Bra007407 Brassica rapa Bra007407 I 0.890
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.890
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.886
29900.m001628 Ricinus communis 29900.m001628 I 0.886
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.886
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.884
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.884
Cla019967 Citrullus lanatus Cla019967 I 0.881
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.881
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.881
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.877
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.876
Ca_19877 Cicer arietinum Ca_19877 I 0.871
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.869
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.868
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.867
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.864
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.855
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.844
mgf006505m Mimulus guttatus mgf006505m I 0.839
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.831
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.831
OBART05G25610 Oryza barthii OBART05G25610 I 0.831
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.831
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.831
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.831
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.831
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.831
OS05G0560600 Oryza sativa OS05G0560600 I 0.831
mgf000047m Mimulus guttatus mgf000047m I 0.830
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.821
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.815
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.814
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.814
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.814
Si022565m.g Setaria italica Si022565m.g I 0.814
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.814
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.814