Cucsa.213110 (Cucumis sativus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cucsa.213110 T250484_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.831 0.603
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.831 0.603
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.213110.1 MADF 36 116
Cucsa.213110.2 MADF 36 116
Cucsa.213110.3 MADF 36 116
Cucsa.213110.4 MADF 36 116

Links

Other MADF family TFs
Other Cucumis sativus TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla019967 Citrullus lanatus Cla019967 I 0.971
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.971
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.925
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.925
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.925
29900.m001628 Ricinus communis 29900.m001628 I 0.914
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.914
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.914
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.907
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.885
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.884
mgf006505m Mimulus guttatus mgf006505m I 0.882
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.881
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.881
Ca_00394 Cicer arietinum Ca_00394 I 0.881
PK27986.1 Cannabis sativa PK27986.1 I 0.881
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.880
TCM_029695 Theobroma cacao TCM_029695 I 0.880
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.880
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.880
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.880
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.879
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.879
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.878
Cla009854 Citrullus lanatus Cla009854 I 0.870
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.868
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.868
OBART05G25610 Oryza barthii OBART05G25610 I 0.868
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.868
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.868
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.868
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.868
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.868
OS05G0560600 Oryza sativa OS05G0560600 I 0.868
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.861
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.860
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.860
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.859
MDP0000301451 Malus domestica MDP0000301451 I 0.859
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.858
mgf000047m Mimulus guttatus mgf000047m I 0.858
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.858
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.854
Si022565m.g Setaria italica Si022565m.g I 0.854
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.854
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.854
Ca_19877 Cicer arietinum Ca_19877 I 0.853
TCM_042467 Theobroma cacao TCM_042467 N 0.846
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.846
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.844
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.843
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.843
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.842
Bo6g075950 Brassica oleracea Bo6g075950 I 0.841
Bra003346 Brassica rapa Bra003346 I 0.841
mgf001239m Mimulus guttatus mgf001239m N 0.841
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.839
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.836
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.836
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.831
Cla002288 Citrullus lanatus Cla002288 I 0.831
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.831
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.831
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.831
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.829
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.828
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.826
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.825
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.821
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.821
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.818