Pavir.J33948 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.J33948 T250831_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.838 0.662
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.838 0.662
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33948.1.p MADF 47 124

Links

Other MADF family TFs
Other Panicum virgatum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si022565m.g Setaria italica Si022565m.g I 0.971
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.971
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.969
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.965
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.964
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.964
OBART05G25610 Oryza barthii OBART05G25610 I 0.964
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.964
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.964
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.964
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.964
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.964
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.964
OS05G0560600 Oryza sativa OS05G0560600 I 0.964
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.960
BRADI2G46320 Brachypodium distachyon BRADI2G46320 N 0.944
LPERR01G22430 Leersia perrieri LPERR01G22430 N 0.938
OPUNC01G26130 Oryza punctata OPUNC01G26130 N 0.938
TRAES3BF009800030CFD_g Triticum aestivum TRAES3BF009800030CFD_g N 0.936
BGIOSGA001035 Oryza indica BGIOSGA001035 N 0.930
OGLUM01G30050 Oryza glumaepatula OGLUM01G30050 N 0.930
OMERI01G23900 Oryza meridionalis OMERI01G23900 N 0.930
ONIVA01G29560 Oryza nivara ONIVA01G29560 N 0.930
ORGLA01G0214300 Oryza glaberrima ORGLA01G0214300 N 0.930
OS01G0674000 Oryza sativa OS01G0674000 N 0.930
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.921
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.917
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.917
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.913
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.907
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.880
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.879
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.878
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.876
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.871
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.869
29900.m001628 Ricinus communis 29900.m001628 I 0.856
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.856
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.856
Cla019967 Citrullus lanatus Cla019967 I 0.854
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.854
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.854
Ca_19877 Cicer arietinum Ca_19877 I 0.853
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.848
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.848
TCM_042467 Theobroma cacao TCM_042467 N 0.847
mgf006505m Mimulus guttatus mgf006505m I 0.846
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.846
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.845
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.843
Bo6g075950 Brassica oleracea Bo6g075950 I 0.842
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.842
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.841
MDP0000301451 Malus domestica MDP0000301451 I 0.840
Bra003346 Brassica rapa Bra003346 I 0.839
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.838
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.838
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.838
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.838
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.837
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.836
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.836
Cla002288 Citrullus lanatus Cla002288 I 0.835
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.829
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.829
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.829
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.829
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.828
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.826
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.826
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.821
29814.m000741 Ricinus communis 29814.m000741 I 0.820
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.819
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.814
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.814
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.814
TCM_029695 Theobroma cacao TCM_029695 I 0.814
Ca_00394 Cicer arietinum Ca_00394 I 0.814
PK27986.1 Cannabis sativa PK27986.1 I 0.814
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.813
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.813