TCM_029695 (Theobroma cacao)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 TCM_029695 T249944_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.903 0.681
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.903 0.681
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY27995 MADF 44 124
EOY27996 MADF 44 124

Links

Other MADF family TFs
Other Theobroma cacao TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.971
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.971
Ca_00394 Cicer arietinum Ca_00394 I 0.971
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.971
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.969
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.963
PK27986.1 Cannabis sativa PK27986.1 I 0.962
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.960
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.960
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.956
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.956
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.955
MDP0000301451 Malus domestica MDP0000301451 I 0.955
Cla009854 Citrullus lanatus Cla009854 I 0.954
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.951
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.949
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.949
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.938
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.936
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.935
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.918
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.913
29900.m001628 Ricinus communis 29900.m001628 I 0.912
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.912
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.910
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.904
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.903
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.903
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.903
Bo6g075950 Brassica oleracea Bo6g075950 I 0.902
Bra003346 Brassica rapa Bra003346 I 0.902
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.902
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.901
Ca_19877 Cicer arietinum Ca_19877 I 0.897
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.896
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.894
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.893
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.888
Cla019967 Citrullus lanatus Cla019967 I 0.880
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.880
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.880
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.876
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.875
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.875
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.864
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.864
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.864
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.864
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.863
Bra007407 Brassica rapa Bra007407 I 0.859
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.856
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.856
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.854
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.850
Cla002288 Citrullus lanatus Cla002288 I 0.841
mgf001239m Mimulus guttatus mgf001239m N 0.839
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.833
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.831
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.831
OBART05G25610 Oryza barthii OBART05G25610 I 0.831
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.831
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.831
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.831
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.831
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.831
OS05G0560600 Oryza sativa OS05G0560600 I 0.831
29814.m000741 Ricinus communis 29814.m000741 I 0.817
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.816
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.816
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.815
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.814
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.814
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.814
Si022565m.g Setaria italica Si022565m.g I 0.814
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.814
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.814