Lus10025404.g (Linum usitatissimum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Lus10025404.g T250743_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.841 0.603
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.841 0.603
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10025404 MADF 41 121

Links

Other MADF family TFs
Other Linum usitatissimum TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.971
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.963
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.931
Cla019967 Citrullus lanatus Cla019967 I 0.925
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.925
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.925
29900.m001628 Ricinus communis 29900.m001628 I 0.902
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.902
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.902
mgf006505m Mimulus guttatus mgf006505m I 0.893
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.892
PK27986.1 Cannabis sativa PK27986.1 I 0.892
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.882
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.878
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.873
MDP0000301451 Malus domestica MDP0000301451 I 0.873
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.871
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.869
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.869
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.869
mgf000047m Mimulus guttatus mgf000047m I 0.868
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.867
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.865
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.864
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.864
TCM_029695 Theobroma cacao TCM_029695 I 0.864
Ca_00394 Cicer arietinum Ca_00394 I 0.864
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.864
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.864
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.864
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.861
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.861
OBART05G25610 Oryza barthii OBART05G25610 I 0.861
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.861
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.861
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.861
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.861
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.861
OS05G0560600 Oryza sativa OS05G0560600 I 0.861
Ca_19877 Cicer arietinum Ca_19877 I 0.857
Cla009854 Citrullus lanatus Cla009854 I 0.851
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.848
Si022565m.g Setaria italica Si022565m.g I 0.848
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.848
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.848
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.846
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.842
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.841
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.841
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.841
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.841
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.841
Bo6g075950 Brassica oleracea Bo6g075950 I 0.840
Bra003346 Brassica rapa Bra003346 I 0.840
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.840
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.840
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.839
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.838
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.834
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.829
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.828
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.828
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.824
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.818
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.815