Ciclev10016016m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10016016m.g T250644_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.877 0.653
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.877 0.653
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016016m MADF 45 125

Links

Other MADF family TFs
Other Citrus clementina TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.971
Cla009854 Citrullus lanatus Cla009854 I 0.962
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.956
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.956
TCM_029695 Theobroma cacao TCM_029695 I 0.956
Ca_00394 Cicer arietinum Ca_00394 I 0.956
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.955
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.954
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.949
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.947
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.945
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.943
PK27986.1 Cannabis sativa PK27986.1 I 0.943
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.940
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.932
MDP0000301451 Malus domestica MDP0000301451 I 0.931
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.929
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.926
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.913
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.913
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.910
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.910
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.910
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.905
29900.m001628 Ricinus communis 29900.m001628 I 0.903
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.903
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.901
Ca_19877 Cicer arietinum Ca_19877 I 0.896
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.894
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.888
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.887
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.885
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.884
Cla019967 Citrullus lanatus Cla019967 I 0.880
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.880
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.880
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.877
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.877
Bo6g075950 Brassica oleracea Bo6g075950 I 0.876
Bra003346 Brassica rapa Bra003346 I 0.876
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.876
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.875
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.875
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.875
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.865
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.864
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.864
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.864
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.862
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.860
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.855
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.855
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.853
mgf001239m Mimulus guttatus mgf001239m N 0.850
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.842
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.842
OBART05G25610 Oryza barthii OBART05G25610 I 0.842
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.842
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.842
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.842
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.842
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.842
OS05G0560600 Oryza sativa OS05G0560600 I 0.842
Cla002288 Citrullus lanatus Cla002288 I 0.841
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.828
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.826
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.826
Si022565m.g Setaria italica Si022565m.g I 0.826
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.826
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.826
Bra007407 Brassica rapa Bra007407 I 0.823
29814.m000741 Ricinus communis 29814.m000741 I 0.817
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.816
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.816
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.815