Cla009854 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla009854 T250130_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.878 0.639
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.878 0.639
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009854 MADF 36 116

Links

Other MADF family TFs
Other Citrullus lanatus TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.962
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.962
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.957
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.955
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.955
Ca_00394 Cicer arietinum Ca_00394 I 0.955
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.955
TCM_029695 Theobroma cacao TCM_029695 I 0.954
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.952
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.948
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.946
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.946
PK27986.1 Cannabis sativa PK27986.1 I 0.942
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.940
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.930
MDP0000301451 Malus domestica MDP0000301451 I 0.930
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.928
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.924
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.923
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.910
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.905
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.903
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.901
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.894
29900.m001628 Ricinus communis 29900.m001628 I 0.893
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.893
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.893
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.891
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.890
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.888
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.883
Ca_19877 Cicer arietinum Ca_19877 I 0.879
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.878
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.878
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.878
Bo6g075950 Brassica oleracea Bo6g075950 I 0.877
Bra003346 Brassica rapa Bra003346 I 0.877
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.877
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.877
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.876
Cla019967 Citrullus lanatus Cla019967 I 0.870
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.870
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.870
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.864
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.854
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.851
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.851
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.851
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.841
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.838
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.838
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.830
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.828
Cla002288 Citrullus lanatus Cla002288 I 0.827
mgf001239m Mimulus guttatus mgf001239m N 0.826
Bra007407 Brassica rapa Bra007407 I 0.825
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.816
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.816
OBART05G25610 Oryza barthii OBART05G25610 I 0.816
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.816
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.816
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.816
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.816
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.816
OS05G0560600 Oryza sativa OS05G0560600 I 0.816