Carubv10017646m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10017646m.g T250630_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.934 0.901
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.934 0.901
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017646m MADF 38 127

Links

Other MADF family TFs
Other Capsella rubella TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.971
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.934
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.934
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.933
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.926
Bo6g075950 Brassica oleracea Bo6g075950 I 0.925
Bra003346 Brassica rapa Bra003346 I 0.925
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.920
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.918
MDP0000301451 Malus domestica MDP0000301451 I 0.917
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.914
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.906
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.905
PK27986.1 Cannabis sativa PK27986.1 I 0.902
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.901
Bra007407 Brassica rapa Bra007407 I 0.899
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.895
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.894
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.888
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.887
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.886
Ca_19877 Cicer arietinum Ca_19877 I 0.883
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.882
Cla009854 Citrullus lanatus Cla009854 I 0.877
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.877
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.876
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.876
Ca_00394 Cicer arietinum Ca_00394 I 0.876
TCM_029695 Theobroma cacao TCM_029695 I 0.875
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.875
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.875
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.875
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.874
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.871
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.869
29900.m001628 Ricinus communis 29900.m001628 I 0.869
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.869
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.869
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.868
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.867
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.864
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.863
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.846
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.844
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.844
OBART05G25610 Oryza barthii OBART05G25610 I 0.844
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.844
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.844
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.844
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.844
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.844
OS05G0560600 Oryza sativa OS05G0560600 I 0.844
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.843
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.843
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.842
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.841
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.841
mgf001239m Mimulus guttatus mgf001239m N 0.835
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.834
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.834
mgf006505m Mimulus guttatus mgf006505m I 0.833
Cla019967 Citrullus lanatus Cla019967 I 0.831
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.831
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.831
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.829
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.829
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.829
Si022565m.g Setaria italica Si022565m.g I 0.829
Cla002288 Citrullus lanatus Cla002288 I 0.829
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.829
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.829
mgf000047m Mimulus guttatus mgf000047m I 0.826
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.815