Carubv10017646m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10017646m.g T250630_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.934 0.901
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.934 0.901
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10017646m MADF 38 127

Links

Other MADF family TFs
Other Capsella rubella TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA017208 Oryza indica BGIOSGA017208 N
OBART04G25140 Oryza barthii OBART04G25140 N
OGLUM04G26680 Oryza glumaepatula OGLUM04G26680 N
OMERI04G22180 Oryza meridionalis OMERI04G22180 N
ONIVA03G13630 Oryza nivara ONIVA03G13630 N
ORGLA04G0217100 Oryza glaberrima ORGLA04G0217100 N
ORUFI04G28400 Oryza rufipogon ORUFI04G28400 N
TGAL6 Oryza sativa OS04G0637000 N