Pavir.Ia04768 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ia04768 T250821_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.900 0.734
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.900 0.734
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04768.1.p MADF 28 99
Pavir.Ia04768.1.p MADF 386 458

Links

Other MADF family TFs
Other Panicum virgatum TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action