Pavir.Ia04768 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ia04768 T250821_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.900 0.734
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.900 0.734
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04768.1.p MADF 28 99
Pavir.Ia04768.1.p MADF 386 458

Links

Other MADF family TFs
Other Panicum virgatum TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si034382m.g Setaria italica Si034382m.g I 0.965
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.962
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.962
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.961
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.960
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.959
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.959
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.958
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.953
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.953
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.953
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.950
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.949
OB04G27270 Oryza brachyantha OB04G27270 I 0.949
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.949
Si012121m.g Setaria italica Si012121m.g I 0.949
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.947
OBART04G20290 Oryza barthii OBART04G20290 I 0.947
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.947
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.947
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.947
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.946
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.946
Pm024289 Prunus mume Pm024289 I 0.946
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.945
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.945
Cla005046 Citrullus lanatus Cla005046 I 0.944
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.943
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.943
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.941
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.940
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.940
TCM_015563 Theobroma cacao TCM_015563 I 0.939
MDP0000451038 Malus domestica MDP0000451038 I 0.938
F775_26337 Aegilops tauschii F775_26337 I 0.937
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.937
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.937
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.937
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.937
MDP0000701272 Malus domestica MDP0000701272 I 0.936
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.935
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.935
OB02G33250 Oryza brachyantha OB02G33250 I 0.934
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.933
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.933
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.933
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.932
30068.m002635 Ricinus communis 30068.m002635 I 0.932
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.931
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.931
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.931
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.931
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.931
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.931
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.931
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.931
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.930
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.929
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.928
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.926
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.926
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.926
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.926
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.926
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.926
OBART02G25970 Oryza barthii OBART02G25970 I 0.925
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.925
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.924
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.924
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.923
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.923
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.923
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.919
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.918
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.916
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.916
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.916
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.914
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.914
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.914
mgf004276m Mimulus guttatus mgf004276m I 0.913
Si016578m.g Setaria italica Si016578m.g I 0.912
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.909
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.908
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.904
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.904
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.904
Bo6g049430 Brassica oleracea Bo6g049430 I 0.903
Bra040010 Brassica rapa Bra040010 I 0.903
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.902
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.900
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.900
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.899
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.896
F775_24861 Aegilops tauschii F775_24861 N 0.895
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.895
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.895
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.894
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.892
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.892
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.890
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.890
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.890
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.890
Pm022572 Prunus mume Pm022572 I 0.890
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.890
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.890
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.889
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.888
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.887
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.887
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.884
Pm022570 Prunus mume Pm022570 I 0.882
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.882
Ca_04386 Cicer arietinum Ca_04386 I 0.881
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.881
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.881
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.881
PK24122.1 Cannabis sativa PK24122.1 I 0.881
29576.m000223 Ricinus communis 29576.m000223 I 0.880
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.880
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.880
Bra008285 Brassica rapa Bra008285 I 0.877
Ca_04385 Cicer arietinum Ca_04385 I 0.877
MDP0000156139 Malus domestica MDP0000156139 I 0.875
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.874
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.874
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.872
mgf021983m Mimulus guttatus mgf021983m I 0.872
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.871
mgf018892m Mimulus guttatus mgf018892m N 0.871
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.871
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.870
TCM_035565 Theobroma cacao TCM_035565 I 0.870
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.869
MDP0000451107 Malus domestica MDP0000451107 I 0.869
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.869
Bo6g083690 Brassica oleracea Bo6g083690 I 0.868
Bo6g120870 Brassica oleracea Bo6g120870 I 0.868
Bra003703 Brassica rapa Bra003703 I 0.868
Bra015716 Brassica rapa Bra015716 I 0.868
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.868
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.868
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.868
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.868
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.868
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.868
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.868
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.868
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.867
TCM_035571 Theobroma cacao TCM_035571 I 0.867
PK26613.1 Cannabis sativa PK26613.1 I 0.867
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.866
30206.m000769 Ricinus communis 30206.m000769 I 0.866
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.866
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.866
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.865
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.864
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.864
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.864
Cla001992 Citrullus lanatus Cla001992 I 0.864
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.864
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.864
Ca_25135 Cicer arietinum Ca_25135 I 0.861
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.861
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.859
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.857
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.857
Bo8g027460 Brassica oleracea Bo8g027460 I 0.854
Bra036731 Brassica rapa Bra036731 I 0.854
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.854
Cla007910 Citrullus lanatus Cla007910 I 0.852
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.851
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.851
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.851
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.851
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.846
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.846
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.844
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.844
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.840
TCM_001348 Theobroma cacao TCM_001348 I 0.839
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.839
Bo2g091240 Brassica oleracea Bo2g091240 I 0.838
Bra003702 Brassica rapa Bra003702 I 0.824
Pm001889 Prunus mume Pm001889 I 0.819
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.818