Bo2g091240 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo2g091240 T247975_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.849 0.655
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.849 0.655
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g091240.1 MADF 40 111
Bo2g091240.1 MADF 372 445

Links

Other MADF family TFs
Other Brassica oleracea TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.954
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.954
Bra003702 Brassica rapa Bra003702 I 0.928
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.926
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.923
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.922
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.921
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.920
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.917
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.916
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.916
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.916
Bo8g027460 Brassica oleracea Bo8g027460 I 0.915
Bra036731 Brassica rapa Bra036731 I 0.915
Ca_25135 Cicer arietinum Ca_25135 I 0.913
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.913
MDP0000156139 Malus domestica MDP0000156139 I 0.913
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.912
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.911
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.911
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.910
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.910
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.910
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.910
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.909
Pm022572 Prunus mume Pm022572 I 0.909
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.909
MDP0000451107 Malus domestica MDP0000451107 I 0.909
Bra003703 Brassica rapa Bra003703 I 0.908
Pm022570 Prunus mume Pm022570 I 0.908
Bo6g083690 Brassica oleracea Bo6g083690 I 0.907
Bo6g120870 Brassica oleracea Bo6g120870 I 0.907
Bra015716 Brassica rapa Bra015716 I 0.907
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.907
Cla001992 Citrullus lanatus Cla001992 I 0.907
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.907
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.907
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.907
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.907
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.907
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.907
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.906
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.905
TCM_035565 Theobroma cacao TCM_035565 I 0.905
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.905
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.905
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.904
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.904
Cla007910 Citrullus lanatus Cla007910 I 0.902
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.902
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.902
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.901
30206.m000769 Ricinus communis 30206.m000769 I 0.901
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.901
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.901
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.900
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.900
Bra008285 Brassica rapa Bra008285 I 0.898
TCM_001348 Theobroma cacao TCM_001348 I 0.898
29576.m000223 Ricinus communis 29576.m000223 I 0.897
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.896
mgf021983m Mimulus guttatus mgf021983m I 0.895
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.894
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.894
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.894
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.893
PK26613.1 Cannabis sativa PK26613.1 I 0.892
Ca_04385 Cicer arietinum Ca_04385 I 0.889
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.888
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.887
Ca_04386 Cicer arietinum Ca_04386 I 0.886
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.885
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.885
OB04G27270 Oryza brachyantha OB04G27270 I 0.883
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.883
TCM_035571 Theobroma cacao TCM_035571 I 0.883
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.883
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.881
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.878
PK24122.1 Cannabis sativa PK24122.1 I 0.878
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.877
mgf018892m Mimulus guttatus mgf018892m N 0.876
OB02G33250 Oryza brachyantha OB02G33250 I 0.875
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.873
OBART04G20290 Oryza barthii OBART04G20290 I 0.873
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.873
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.873
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.873
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.871
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.871
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.871
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.871
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.868
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.867
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.867
Si012121m.g Setaria italica Si012121m.g I 0.867
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.865
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.865
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.864
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.863
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.863
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.863
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.860
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.860
OBART02G25970 Oryza barthii OBART02G25970 I 0.860
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.860
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.857
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.857
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.857
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.857
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.856
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.856
Cla005046 Citrullus lanatus Cla005046 I 0.856
mgf015314m Mimulus guttatus mgf015314m N 0.856
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.854
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.854
Pm024289 Prunus mume Pm024289 I 0.854
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.854
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.854
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.854
Bo6g049430 Brassica oleracea Bo6g049430 I 0.853
Bra040010 Brassica rapa Bra040010 I 0.853
Si034382m.g Setaria italica Si034382m.g I 0.853
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.853
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.851
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.851
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.851
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.851
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.851
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.851
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.850
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.850
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.849
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.849
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.849
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.849
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.848
F775_26337 Aegilops tauschii F775_26337 I 0.846
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.846
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.846
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.846
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.846
TCM_015563 Theobroma cacao TCM_015563 I 0.846
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.846
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.846
30068.m002635 Ricinus communis 30068.m002635 I 0.846
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.846
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.844
MDP0000451038 Malus domestica MDP0000451038 I 0.844
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.843
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.843
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.843
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.842
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.842
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.842
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.841
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.839
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.839
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.839
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.839
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.838
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.838
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.838
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.837
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.837
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.835
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.835
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.834
MDP0000701272 Malus domestica MDP0000701272 I 0.834
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.833
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.832
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.830
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.830
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.830
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.830
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.828
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.827
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.827
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.827
Si016578m.g Setaria italica Si016578m.g I 0.826
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.825
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.824
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.824
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.820
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.817
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.817
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.814
mgf004276m Mimulus guttatus mgf004276m I 0.812