Gorai.003G072300 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.003G072300 T250704_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.898 0.813
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.898 0.813
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.003G072300.1 MADF 110 179
Gorai.003G072300.1 MADF 506 575
Gorai.003G072300.2 MADF 110 179
Gorai.003G072300.2 MADF 506 575
Gorai.003G072300.3 MADF 110 179
Gorai.003G072300.3 MADF 506 575

Links

Other MADF family TFs
Other Gossypium raimondii TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_015563 Theobroma cacao TCM_015563 I 0.968
30068.m002635 Ricinus communis 30068.m002635 I 0.965
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.964
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.964
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.964
Pm024289 Prunus mume Pm024289 I 0.964
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.964
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.964
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.964
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.962
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.961
MDP0000451038 Malus domestica MDP0000451038 I 0.961
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.959
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.959
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.959
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.958
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.957
Si012121m.g Setaria italica Si012121m.g I 0.957
F775_26337 Aegilops tauschii F775_26337 I 0.956
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.956
MDP0000701272 Malus domestica MDP0000701272 I 0.956
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.955
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.955
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.955
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.953
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.953
OB04G27270 Oryza brachyantha OB04G27270 I 0.953
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.953
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.953
Cla005046 Citrullus lanatus Cla005046 I 0.953
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.953
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.953
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.952
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.951
OBART04G20290 Oryza barthii OBART04G20290 I 0.951
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.951
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.951
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.951
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.951
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.948
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.947
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.947
Si034382m.g Setaria italica Si034382m.g I 0.945
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.944
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.943
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.943
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.941
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.939
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.939
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.939
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.939
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.939
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.939
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.938
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.938
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.934
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.933
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.931
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.931
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.931
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.930
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.929
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.929
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.929
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.928
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.925
OBART02G25970 Oryza barthii OBART02G25970 I 0.925
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.925
mgf004276m Mimulus guttatus mgf004276m I 0.925
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.924
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.923
OB02G33250 Oryza brachyantha OB02G33250 I 0.921
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.919
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.918
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.918
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.918
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.918
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.918
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.917
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.917
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.913
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.912
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.911
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.910
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.910
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.909
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.909
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.909
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.909
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.909
MDP0000156139 Malus domestica MDP0000156139 I 0.908
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.907
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.907
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.906
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.906
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.906
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.906
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.906
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.906
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.905
TCM_035565 Theobroma cacao TCM_035565 I 0.905
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.904
Pm022572 Prunus mume Pm022572 I 0.904
MDP0000451107 Malus domestica MDP0000451107 I 0.904
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.904
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.902
Bo6g049430 Brassica oleracea Bo6g049430 I 0.901
Bra040010 Brassica rapa Bra040010 I 0.901
Si016578m.g Setaria italica Si016578m.g I 0.901
TCM_001348 Theobroma cacao TCM_001348 I 0.901
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.900
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.900
PK24122.1 Cannabis sativa PK24122.1 I 0.900
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.898
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.898
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.898
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.898
29576.m000223 Ricinus communis 29576.m000223 I 0.897
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.897
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.897
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.897
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.895
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.894
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.894
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.894
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.893
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.893
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.893
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.892
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.892
Ca_04386 Cicer arietinum Ca_04386 I 0.892
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.890
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.890
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.890
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.889
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.889
Bo6g083690 Brassica oleracea Bo6g083690 I 0.888
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.888
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.888
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.888
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.888
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.888
Bra003703 Brassica rapa Bra003703 I 0.887
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.887
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.886
TCM_035571 Theobroma cacao TCM_035571 I 0.886
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.885
Ca_25135 Cicer arietinum Ca_25135 I 0.885
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.885
Cla001992 Citrullus lanatus Cla001992 I 0.883
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.883
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.882
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.881
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.881
mgf018892m Mimulus guttatus mgf018892m N 0.881
30206.m000769 Ricinus communis 30206.m000769 I 0.880
Pm022570 Prunus mume Pm022570 I 0.879
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.879
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.878
Bo6g120870 Brassica oleracea Bo6g120870 I 0.877
Bra008285 Brassica rapa Bra008285 I 0.877
Bra015716 Brassica rapa Bra015716 I 0.877
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.875
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.875
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.875
F775_24861 Aegilops tauschii F775_24861 N 0.873
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.871
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.870
mgf021983m Mimulus guttatus mgf021983m I 0.870
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.870
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.870
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.869
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.869
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.869
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.865
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.861
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.859
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.857
Ca_04385 Cicer arietinum Ca_04385 I 0.853
Cla007910 Citrullus lanatus Cla007910 I 0.851
Bo8g027460 Brassica oleracea Bo8g027460 I 0.850
Bra036731 Brassica rapa Bra036731 I 0.850
Pm001889 Prunus mume Pm001889 I 0.848
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.843
Bra003702 Brassica rapa Bra003702 I 0.840
Bo2g091240 Brassica oleracea Bo2g091240 I 0.834
PK26613.1 Cannabis sativa PK26613.1 I 0.830
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.823
GSMUA_Achr2G00580_001 Musa acuminata GSMUA_Achr2G00580_001 N 0.822
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.820