TCM_035565 (Theobroma cacao)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 TCM_035565 T249946_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.860 0.725
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.860 0.725
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.849 0.717
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY16707 MADF 101 171
EOY16707 MADF 457 530

Links

Other MADF family TFs
Other Theobroma cacao TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.961
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.961
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.961
PK24122.1 Cannabis sativa PK24122.1 I 0.960
Ca_04386 Cicer arietinum Ca_04386 I 0.959
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.958
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.957
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.956
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.956
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.956
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.956
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.955
29576.m000223 Ricinus communis 29576.m000223 I 0.955
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.955
MDP0000156139 Malus domestica MDP0000156139 I 0.955
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.954
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.954
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.953
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.953
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.953
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.952
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.951
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.951
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.951
MDP0000451107 Malus domestica MDP0000451107 I 0.951
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.951
TCM_035571 Theobroma cacao TCM_035571 I 0.949
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.949
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.948
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.948
Pm022572 Prunus mume Pm022572 I 0.948
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.948
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.948
Bo6g083690 Brassica oleracea Bo6g083690 I 0.946
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.946
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.946
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.946
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.946
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.946
Bra003703 Brassica rapa Bra003703 I 0.945
Ca_25135 Cicer arietinum Ca_25135 I 0.945
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.944
mgf021983m Mimulus guttatus mgf021983m I 0.944
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.943
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.943
Cla001992 Citrullus lanatus Cla001992 I 0.943
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.943
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.943
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.941
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.941
Bo6g120870 Brassica oleracea Bo6g120870 I 0.940
Bra015716 Brassica rapa Bra015716 I 0.940
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.940
Bra008285 Brassica rapa Bra008285 I 0.939
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.939
mgf018892m Mimulus guttatus mgf018892m N 0.936
Ca_04385 Cicer arietinum Ca_04385 I 0.934
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.932
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.932
Cla007910 Citrullus lanatus Cla007910 I 0.928
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.928
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.928
PK26613.1 Cannabis sativa PK26613.1 I 0.925
Bra003702 Brassica rapa Bra003702 I 0.921
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.920
30206.m000769 Ricinus communis 30206.m000769 I 0.920
TCM_001348 Theobroma cacao TCM_001348 I 0.919
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.917
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.915
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.912
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.909
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.909
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.909
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.907
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.907
F775_26337 Aegilops tauschii F775_26337 I 0.906
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.906
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.906
Bo2g091240 Brassica oleracea Bo2g091240 I 0.905
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.905
Bo8g027460 Brassica oleracea Bo8g027460 I 0.904
Bra036731 Brassica rapa Bra036731 I 0.904
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.903
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.902
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.901
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.901
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.900
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.900
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.900
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.899
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.898
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.898
OB04G27270 Oryza brachyantha OB04G27270 I 0.898
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.898
Pm022570 Prunus mume Pm022570 I 0.898
TCM_015563 Theobroma cacao TCM_015563 I 0.897
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.897
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.897
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.897
mgf004276m Mimulus guttatus mgf004276m I 0.897
MDP0000701272 Malus domestica MDP0000701272 I 0.897
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.896
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.895
mgf015314m Mimulus guttatus mgf015314m N 0.895
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.894
OBART04G20290 Oryza barthii OBART04G20290 I 0.894
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.894
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.894
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.894
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.894
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.894
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.894
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.893
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.893
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.893
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.893
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.893
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.892
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.891
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.891
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.890
Si012121m.g Setaria italica Si012121m.g I 0.889
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.889
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.889
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.888
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.887
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.887
30068.m002635 Ricinus communis 30068.m002635 I 0.887
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.887
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.887
Cla005046 Citrullus lanatus Cla005046 I 0.885
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.883
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.883
Si034382m.g Setaria italica Si034382m.g I 0.883
Pm024289 Prunus mume Pm024289 I 0.883
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.883
MDP0000451038 Malus domestica MDP0000451038 I 0.881
OBART02G25970 Oryza barthii OBART02G25970 I 0.880
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.880
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.879
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.879
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.879
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.879
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.877
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.877
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.877
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.877
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.877
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.876
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.875
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.875
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.875
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.875
OB02G33250 Oryza brachyantha OB02G33250 I 0.874
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.874
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.873
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.870
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.870
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.870
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.870
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.870
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.870
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.870
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.870
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.870
F775_24861 Aegilops tauschii F775_24861 N 0.869
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.869
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.868
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.866
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.865
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.864
Bo6g049430 Brassica oleracea Bo6g049430 I 0.863
Bra040010 Brassica rapa Bra040010 I 0.863
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.863
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.861
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.860
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.860
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.858
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.856
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.856
Si016578m.g Setaria italica Si016578m.g I 0.855
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.851
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.850
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.849
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.842
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.837
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.837
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.835
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.835
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.831
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.828
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.819
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.816
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.813