gw1.19.47.1 (Physcomitrella patens)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 gw1.19.47.1 T250529_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.888 0.732
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.888 0.732
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.19.47.1 MADF 68 139
gw1.19.47.1 MADF 397 468

Links

Other MADF family TFs
Other Physcomitrella patens TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.965
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.943
Si012121m.g Setaria italica Si012121m.g I 0.942
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.942
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.942
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.942
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.940
OBART04G20290 Oryza barthii OBART04G20290 I 0.940
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.940
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.940
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.940
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.937
OB04G27270 Oryza brachyantha OB04G27270 I 0.937
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.937
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.937
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.936
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.936
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.936
Pm024289 Prunus mume Pm024289 I 0.936
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.936
MDP0000701272 Malus domestica MDP0000701272 I 0.934
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.932
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.932
MDP0000451038 Malus domestica MDP0000451038 I 0.932
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.931
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.931
TCM_015563 Theobroma cacao TCM_015563 I 0.930
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.930
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.930
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.930
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.930
F775_26337 Aegilops tauschii F775_26337 I 0.928
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.928
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.927
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.926
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.926
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.925
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.925
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.924
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.924
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.923
30068.m002635 Ricinus communis 30068.m002635 I 0.922
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.922
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.920
Si034382m.g Setaria italica Si034382m.g I 0.920
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.919
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.918
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.915
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.915
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.914
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.914
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.914
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.914
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.914
Cla005046 Citrullus lanatus Cla005046 I 0.914
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.914
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.911
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.911
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.911
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.911
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.910
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.910
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.910
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.909
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.908
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.908
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.907
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.907
OB02G33250 Oryza brachyantha OB02G33250 I 0.906
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.906
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.903
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.902
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.902
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.902
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.902
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.901
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.900
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.899
mgf004276m Mimulus guttatus mgf004276m I 0.899
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.897
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.894
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.894
OBART02G25970 Oryza barthii OBART02G25970 I 0.893
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.893
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.892
Ca_04386 Cicer arietinum Ca_04386 I 0.892
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.892
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.892
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.892
Bo6g049430 Brassica oleracea Bo6g049430 I 0.891
Bra040010 Brassica rapa Bra040010 I 0.891
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.891
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.890
PK24122.1 Cannabis sativa PK24122.1 I 0.890
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.888
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.888
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.888
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.888
TCM_035565 Theobroma cacao TCM_035565 I 0.887
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.886
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.886
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.886
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.885
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.885
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.884
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.883
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.883
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.882
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.882
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.881
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.879
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.878
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.876
29576.m000223 Ricinus communis 29576.m000223 I 0.875
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.874
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.874
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.874
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.873
MDP0000156139 Malus domestica MDP0000156139 I 0.873
MDP0000451107 Malus domestica MDP0000451107 I 0.873
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.872
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.872
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.872
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.872
Bo6g083690 Brassica oleracea Bo6g083690 I 0.871
Bo6g120870 Brassica oleracea Bo6g120870 I 0.871
Bra003703 Brassica rapa Bra003703 I 0.871
Bra015716 Brassica rapa Bra015716 I 0.871
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.871
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.871
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.871
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.871
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.871
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.871
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.871
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.871
Bo8g027460 Brassica oleracea Bo8g027460 I 0.870
Bra036731 Brassica rapa Bra036731 I 0.870
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.870
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.869
Ca_25135 Cicer arietinum Ca_25135 I 0.869
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.869
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.869
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.868
mgf021983m Mimulus guttatus mgf021983m I 0.868
Ca_04385 Cicer arietinum Ca_04385 I 0.867
Cla001992 Citrullus lanatus Cla001992 I 0.867
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.867
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.867
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.866
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.865
Cla007910 Citrullus lanatus Cla007910 I 0.865
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.865
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.865
30206.m000769 Ricinus communis 30206.m000769 I 0.863
Pm022570 Prunus mume Pm022570 I 0.862
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.862
TCM_035571 Theobroma cacao TCM_035571 I 0.861
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.859
Si016578m.g Setaria italica Si016578m.g I 0.859
Bra008285 Brassica rapa Bra008285 I 0.858
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.858
Pm022572 Prunus mume Pm022572 I 0.858
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.857
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.857
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.855
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.854
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.853
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.850
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.850
PK26613.1 Cannabis sativa PK26613.1 I 0.848
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.847
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.847
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.847
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.847
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.846
mgf018892m Mimulus guttatus mgf018892m N 0.845
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.842
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.842
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.837
F775_24861 Aegilops tauschii F775_24861 N 0.836
Bo2g091240 Brassica oleracea Bo2g091240 I 0.835
TCM_001348 Theobroma cacao TCM_001348 I 0.831
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.831
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.828
Pm001889 Prunus mume Pm001889 I 0.824
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.824
Bra003702 Brassica rapa Bra003702 I 0.813