29576.m000223 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 29576.m000223 T250438_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.841 0.662
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.841 0.662
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.827 0.713
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29576.m000223 MADF 86 155
29576.m000223 MADF 465 536

Links

Other MADF family TFs
Other Ricinus communis TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_035571 Theobroma cacao TCM_035571 I 0.962
TCM_035565 Theobroma cacao TCM_035565 I 0.955
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.955
mgf018892m Mimulus guttatus mgf018892m N 0.953
mgf021983m Mimulus guttatus mgf021983m I 0.953
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.952
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.952
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.952
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.952
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.952
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.951
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.950
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.948
PK24122.1 Cannabis sativa PK24122.1 I 0.948
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.947
Ca_04386 Cicer arietinum Ca_04386 I 0.947
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.947
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.947
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.946
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.945
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.944
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.944
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.944
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.944
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.943
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.943
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.943
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.941
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.941
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.941
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.941
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.940
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.939
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.939
Cla007910 Citrullus lanatus Cla007910 I 0.938
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.936
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.935
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.934
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.934
Bra003703 Brassica rapa Bra003703 I 0.933
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.933
Bo6g083690 Brassica oleracea Bo6g083690 I 0.932
Bo6g120870 Brassica oleracea Bo6g120870 I 0.932
Bra015716 Brassica rapa Bra015716 I 0.932
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.932
Ca_04385 Cicer arietinum Ca_04385 I 0.932
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.932
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.932
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.932
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.932
MDP0000156139 Malus domestica MDP0000156139 I 0.931
PK26613.1 Cannabis sativa PK26613.1 I 0.931
Ca_25135 Cicer arietinum Ca_25135 I 0.930
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.929
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.928
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.928
Pm022572 Prunus mume Pm022572 I 0.928
MDP0000451107 Malus domestica MDP0000451107 I 0.928
Cla001992 Citrullus lanatus Cla001992 I 0.926
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.926
Bra008285 Brassica rapa Bra008285 I 0.925
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.925
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.920
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.920
Bra003702 Brassica rapa Bra003702 I 0.919
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.919
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.916
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.916
F775_26337 Aegilops tauschii F775_26337 I 0.914
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.914
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.912
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.912
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.912
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.912
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.912
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.912
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.911
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.909
TCM_001348 Theobroma cacao TCM_001348 I 0.909
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.907
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.907
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.907
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.907
Pm022570 Prunus mume Pm022570 I 0.907
30206.m000769 Ricinus communis 30206.m000769 I 0.907
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.907
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.906
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.906
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.906
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.906
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.905
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.904
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.903
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.903
mgf015314m Mimulus guttatus mgf015314m N 0.903
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.902
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.902
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.901
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.899
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.899
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.898
OB04G27270 Oryza brachyantha OB04G27270 I 0.898
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.898
Bo2g091240 Brassica oleracea Bo2g091240 I 0.897
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.897
MDP0000701272 Malus domestica MDP0000701272 I 0.897
Cla005046 Citrullus lanatus Cla005046 I 0.896
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.896
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.894
OBART04G20290 Oryza barthii OBART04G20290 I 0.894
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.894
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.894
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.894
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.894
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.894
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.894
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.894
Pm024289 Prunus mume Pm024289 I 0.894
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.894
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.892
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.891
Bo8g027460 Brassica oleracea Bo8g027460 I 0.890
Bra036731 Brassica rapa Bra036731 I 0.890
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.890
Si012121m.g Setaria italica Si012121m.g I 0.889
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.889
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.889
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.888
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.888
TCM_015563 Theobroma cacao TCM_015563 I 0.888
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.887
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.887
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.886
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.886
MDP0000451038 Malus domestica MDP0000451038 I 0.886
Si034382m.g Setaria italica Si034382m.g I 0.883
mgf004276m Mimulus guttatus mgf004276m I 0.883
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.882
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.882
OBART02G25970 Oryza barthii OBART02G25970 I 0.880
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.880
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.880
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.879
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.879
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.879
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.879
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.879
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.879
Si016578m.g Setaria italica Si016578m.g I 0.879
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.879
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.877
30068.m002635 Ricinus communis 30068.m002635 I 0.877
F775_24861 Aegilops tauschii F775_24861 N 0.876
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.876
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.876
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.876
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.876
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.875
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.875
OB02G33250 Oryza brachyantha OB02G33250 I 0.874
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.873
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.873
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.873
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.873
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.873
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.870
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.869
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.869
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.869
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.869
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.869
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.869
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.868
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.868
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.859
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.859
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.858
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.856
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.853
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.852
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.847
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.846
Bo6g049430 Brassica oleracea Bo6g049430 I 0.845
Bra040010 Brassica rapa Bra040010 I 0.845
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.844
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.843
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.841
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.841
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.832
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.829
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.827
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.820
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.819
Pm001889 Prunus mume Pm001889 I 0.816