ONIVA10G17310 (Oryza nivara)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 ONIVA10G17310 T249575_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.901 0.775
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.901 0.775
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA10G17310.1 MADF 186 257
ONIVA10G17310.1 MADF 562 635
ONIVA10G17310.2 MADF 200 271
ONIVA10G17310.2 MADF 576 649

Links

Other MADF family TFs
Other Oryza nivara TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.971
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.971
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.971
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.971
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.969
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.968
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.966
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.962
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.962
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.956
F775_26337 Aegilops tauschii F775_26337 I 0.953
OB04G27270 Oryza brachyantha OB04G27270 I 0.953
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.953
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.953
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.952
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.951
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.951
OBART04G20290 Oryza barthii OBART04G20290 I 0.951
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.951
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.951
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.951
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.951
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.951
Pm024289 Prunus mume Pm024289 I 0.951
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.949
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.949
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.948
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.948
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.948
Si012121m.g Setaria italica Si012121m.g I 0.948
MDP0000701272 Malus domestica MDP0000701272 I 0.948
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.948
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.947
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.947
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.945
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.945
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.944
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.944
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.944
TCM_015563 Theobroma cacao TCM_015563 I 0.944
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.943
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.943
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.943
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.943
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.943
MDP0000451038 Malus domestica MDP0000451038 I 0.943
Cla005046 Citrullus lanatus Cla005046 I 0.942
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.942
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.941
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.940
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.939
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.939
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.939
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.938
30068.m002635 Ricinus communis 30068.m002635 I 0.938
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.938
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.938
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.938
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.938
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.936
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.936
Si034382m.g Setaria italica Si034382m.g I 0.934
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.932
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.926
OB02G33250 Oryza brachyantha OB02G33250 I 0.923
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.922
mgf004276m Mimulus guttatus mgf004276m I 0.922
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.921
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.920
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.920
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.920
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.920
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.920
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.917
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.914
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.914
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.914
OBART02G25970 Oryza barthii OBART02G25970 I 0.913
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.913
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.912
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.912
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.912
29576.m000223 Ricinus communis 29576.m000223 I 0.912
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.911
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.909
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.909
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.908
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.907
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.906
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.905
Bo6g049430 Brassica oleracea Bo6g049430 I 0.904
Bra040010 Brassica rapa Bra040010 I 0.904
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.904
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.904
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.903
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.903
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.903
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.903
TCM_035571 Theobroma cacao TCM_035571 I 0.902
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.901
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.901
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.900
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.899
Pm022572 Prunus mume Pm022572 I 0.899
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.899
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.898
Si016578m.g Setaria italica Si016578m.g I 0.898
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.898
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.897
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.897
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.897
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.896
MDP0000156139 Malus domestica MDP0000156139 I 0.896
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.896
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.895
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.895
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.894
TCM_035565 Theobroma cacao TCM_035565 I 0.893
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.893
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.893
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.892
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.892
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.892
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.892
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.891
Pm001889 Prunus mume Pm001889 I 0.891
MDP0000451107 Malus domestica MDP0000451107 I 0.891
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.890
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.890
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.889
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.887
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.887
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.887
TCM_001348 Theobroma cacao TCM_001348 I 0.887
30206.m000769 Ricinus communis 30206.m000769 I 0.886
Pm022570 Prunus mume Pm022570 I 0.885
mgf021983m Mimulus guttatus mgf021983m I 0.885
mgf018892m Mimulus guttatus mgf018892m N 0.884
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.884
Bo6g083690 Brassica oleracea Bo6g083690 I 0.882
Bo6g120870 Brassica oleracea Bo6g120870 I 0.882
Bra015716 Brassica rapa Bra015716 I 0.882
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.882
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.882
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.882
Ca_04386 Cicer arietinum Ca_04386 I 0.882
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.882
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.882
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.882
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.882
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.882
Bra003703 Brassica rapa Bra003703 I 0.881
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.881
Cla007910 Citrullus lanatus Cla007910 I 0.879
F775_24861 Aegilops tauschii F775_24861 N 0.878
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.878
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.878
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.875
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.873
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.873
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.873
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.872
PK24122.1 Cannabis sativa PK24122.1 I 0.872
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.871
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.871
Bra008285 Brassica rapa Bra008285 I 0.870
Ca_04385 Cicer arietinum Ca_04385 I 0.870
Ca_25135 Cicer arietinum Ca_25135 I 0.870
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.868
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.866
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.866
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.866
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.866
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.865
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.864
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.864
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.862
PK26613.1 Cannabis sativa PK26613.1 I 0.860
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.859
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.858
Cla001992 Citrullus lanatus Cla001992 I 0.856
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.856
Bo8g027460 Brassica oleracea Bo8g027460 I 0.855
Bra036731 Brassica rapa Bra036731 I 0.855
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.855
Bo2g091240 Brassica oleracea Bo2g091240 I 0.851
Bra003702 Brassica rapa Bra003702 I 0.838
mgf015314m Mimulus guttatus mgf015314m N 0.832
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.831
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.828
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.825
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.825
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.823
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.822