Solyc12g056510.1 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc12g056510.1 T249897_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.884 0.691
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.884 0.691
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.828 0.691
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g056510.1.1 MADF 87 157
Solyc12g056510.1.1 MADF 473 543

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.958
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.958
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.958
TCM_035565 Theobroma cacao TCM_035565 I 0.957
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.957
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.957
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.952
29576.m000223 Ricinus communis 29576.m000223 I 0.952
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.951
MDP0000156139 Malus domestica MDP0000156139 I 0.951
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.951
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.951
PK24122.1 Cannabis sativa PK24122.1 I 0.951
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.950
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.950
Ca_04386 Cicer arietinum Ca_04386 I 0.950
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.948
MDP0000451107 Malus domestica MDP0000451107 I 0.948
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.947
TCM_035571 Theobroma cacao TCM_035571 I 0.945
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.944
mgf021983m Mimulus guttatus mgf021983m I 0.944
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.944
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.944
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.943
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.943
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.942
Pm022572 Prunus mume Pm022572 I 0.942
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.942
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.941
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.941
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.940
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.939
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.938
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.938
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.938
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.938
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.937
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.937
30206.m000769 Ricinus communis 30206.m000769 I 0.936
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.935
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.934
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.934
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.933
mgf018892m Mimulus guttatus mgf018892m N 0.931
Ca_04385 Cicer arietinum Ca_04385 I 0.930
Ca_25135 Cicer arietinum Ca_25135 I 0.930
Cla001992 Citrullus lanatus Cla001992 I 0.930
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.930
Bo6g083690 Brassica oleracea Bo6g083690 I 0.929
Bo6g120870 Brassica oleracea Bo6g120870 I 0.929
Bra003703 Brassica rapa Bra003703 I 0.929
Bra015716 Brassica rapa Bra015716 I 0.929
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.929
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.929
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.929
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.929
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.929
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.929
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.929
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.928
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.928
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.928
F775_26337 Aegilops tauschii F775_26337 I 0.927
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.927
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.927
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.926
OBART04G20290 Oryza barthii OBART04G20290 I 0.926
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.926
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.926
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.926
TCM_001348 Theobroma cacao TCM_001348 I 0.926
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.925
OB04G27270 Oryza brachyantha OB04G27270 I 0.925
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.925
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.923
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.923
Cla007910 Citrullus lanatus Cla007910 I 0.923
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.923
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.923
Si012121m.g Setaria italica Si012121m.g I 0.922
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.922
Bra008285 Brassica rapa Bra008285 I 0.921
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.921
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.921
MDP0000701272 Malus domestica MDP0000701272 I 0.921
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.920
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.919
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.918
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.918
mgf004276m Mimulus guttatus mgf004276m I 0.918
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.918
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.917
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.917
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.917
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.917
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.917
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.916
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.916
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.916
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.916
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.916
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.915
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.915
Pm022570 Prunus mume Pm022570 I 0.915
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.915
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.915
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.914
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.914
Bra003702 Brassica rapa Bra003702 I 0.913
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.913
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.913
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.913
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.913
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.912
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.911
Cla005046 Citrullus lanatus Cla005046 I 0.911
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.910
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.909
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.909
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.909
Si034382m.g Setaria italica Si034382m.g I 0.909
Pm024289 Prunus mume Pm024289 I 0.909
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.909
PK26613.1 Cannabis sativa PK26613.1 I 0.909
MDP0000451038 Malus domestica MDP0000451038 I 0.908
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.907
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.905
Bra036731 Brassica rapa Bra036731 I 0.904
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.904
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.904
TCM_015563 Theobroma cacao TCM_015563 I 0.904
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.904
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.904
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.904
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.903
Bo8g027460 Brassica oleracea Bo8g027460 I 0.900
OBART02G25970 Oryza barthii OBART02G25970 I 0.899
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.899
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.899
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.897
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.896
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.896
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.896
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.896
30068.m002635 Ricinus communis 30068.m002635 I 0.895
Bo2g091240 Brassica oleracea Bo2g091240 I 0.894
OB02G33250 Oryza brachyantha OB02G33250 I 0.894
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.894
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.893
Bo6g049430 Brassica oleracea Bo6g049430 I 0.892
Bra040010 Brassica rapa Bra040010 I 0.892
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.890
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.890
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.890
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.890
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.890
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.890
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.889
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.888
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.888
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.888
mgf015314m Mimulus guttatus mgf015314m N 0.887
F775_24861 Aegilops tauschii F775_24861 N 0.886
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.885
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.885
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.884
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.884
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.884
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.884
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.883
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.881
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.881
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.880
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.878
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.878
Si016578m.g Setaria italica Si016578m.g I 0.877
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.876
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.876
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.875
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.874
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.871
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.868
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.867
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.864
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.863
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.853
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.852
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.844
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.844
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.843
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.839
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.836
Pm001889 Prunus mume Pm001889 I 0.833
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.831
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.828
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.820