cassava16854.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava16854.m1 T250459_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.861 0.708
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.861 0.708
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.848 0.752
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava16854.m1 MADF 81 150
cassava16854.m1 MADF 458 530

Links

Other MADF family TFs
Other Manihot esculenta TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.968
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.967
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.963
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.962
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.962
Bo6g083690 Brassica oleracea Bo6g083690 I 0.960
Bra003703 Brassica rapa Bra003703 I 0.960
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.960
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.960
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.960
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.960
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.960
Ca_25135 Cicer arietinum Ca_25135 I 0.959
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.958
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.958
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.958
Ca_04386 Cicer arietinum Ca_04386 I 0.957
Bo6g120870 Brassica oleracea Bo6g120870 I 0.956
Bra008285 Brassica rapa Bra008285 I 0.956
Bra015716 Brassica rapa Bra015716 I 0.956
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.956
TCM_035565 Theobroma cacao TCM_035565 I 0.955
MDP0000156139 Malus domestica MDP0000156139 I 0.955
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.954
MDP0000451107 Malus domestica MDP0000451107 I 0.953
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.952
Cla001992 Citrullus lanatus Cla001992 I 0.952
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.952
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.951
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.951
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.951
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.950
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.950
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.950
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.949
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.949
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.948
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.948
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.948
PK24122.1 Cannabis sativa PK24122.1 I 0.948
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.947
Ca_04385 Cicer arietinum Ca_04385 I 0.947
Pm022572 Prunus mume Pm022572 I 0.947
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.947
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.946
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.946
29576.m000223 Ricinus communis 29576.m000223 I 0.944
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.943
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.943
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.943
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.942
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.941
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.941
30206.m000769 Ricinus communis 30206.m000769 I 0.940
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.940
TCM_001348 Theobroma cacao TCM_001348 I 0.939
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.939
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.939
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.937
TCM_035571 Theobroma cacao TCM_035571 I 0.936
mgf021983m Mimulus guttatus mgf021983m I 0.935
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.934
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.934
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.933
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.933
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.928
mgf018892m Mimulus guttatus mgf018892m N 0.927
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.926
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.926
Pm022570 Prunus mume Pm022570 I 0.925
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.925
Cla007910 Citrullus lanatus Cla007910 I 0.924
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.924
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.924
Bo8g027460 Brassica oleracea Bo8g027460 I 0.922
Bra036731 Brassica rapa Bra036731 I 0.922
PK26613.1 Cannabis sativa PK26613.1 I 0.922
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.920
Bo2g091240 Brassica oleracea Bo2g091240 I 0.917
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.913
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.912
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.909
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.908
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.907
F775_26337 Aegilops tauschii F775_26337 I 0.907
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.907
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.906
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.906
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.906
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.904
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.904
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.903
Bra003702 Brassica rapa Bra003702 I 0.902
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.902
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.901
OB04G27270 Oryza brachyantha OB04G27270 I 0.900
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.900
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.899
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.899
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.899
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.899
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.899
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.899
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.899
MDP0000701272 Malus domestica MDP0000701272 I 0.899
TCM_015563 Theobroma cacao TCM_015563 I 0.898
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.898
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.898
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.896
OBART04G20290 Oryza barthii OBART04G20290 I 0.896
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.896
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.896
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.896
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.896
mgf004276m Mimulus guttatus mgf004276m I 0.896
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.895
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.895
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.894
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.894
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.894
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.894
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.894
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.893
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.893
Si012121m.g Setaria italica Si012121m.g I 0.892
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.892
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.892
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.891
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.891
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.889
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.889
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.888
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.888
30068.m002635 Ricinus communis 30068.m002635 I 0.888
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.888
Cla005046 Citrullus lanatus Cla005046 I 0.887
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.886
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.885
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.885
Si034382m.g Setaria italica Si034382m.g I 0.885
Pm024289 Prunus mume Pm024289 I 0.885
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.885
mgf015314m Mimulus guttatus mgf015314m N 0.884
MDP0000451038 Malus domestica MDP0000451038 I 0.883
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.882
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.882
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.882
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.882
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.881
OBART02G25970 Oryza barthii OBART02G25970 I 0.881
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.881
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.879
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.879
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.877
OB02G33250 Oryza brachyantha OB02G33250 I 0.876
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.876
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.876
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.874
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.873
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.872
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.872
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.871
F775_24861 Aegilops tauschii F775_24861 N 0.871
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.871
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.871
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.871
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.871
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.871
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.870
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.868
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.866
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.865
Bo6g049430 Brassica oleracea Bo6g049430 I 0.864
Bra040010 Brassica rapa Bra040010 I 0.864
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.863
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.863
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.861
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.861
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.860
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.860
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.858
Si016578m.g Setaria italica Si016578m.g I 0.856
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.854
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.854
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.849
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.848
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.844
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.842
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.838
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.836
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.836
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.830
Pm001889 Prunus mume Pm001889 I 0.826
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.818
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.815