Ciclev10025533m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10025533m.g T250649_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.876 0.667
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.876 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10025533m MADF 55 122
Ciclev10025533m MADF 317 389

Links

Other MADF family TFs
Other Citrus clementina TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.971
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.950
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.947
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.947
TCM_001348 Theobroma cacao TCM_001348 I 0.943
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.940
30206.m000769 Ricinus communis 30206.m000769 I 0.936
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.932
Cla007910 Citrullus lanatus Cla007910 I 0.929
Pm022570 Prunus mume Pm022570 I 0.929
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.929
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.928
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.928
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.927
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.927
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.925
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.925
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.924
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.924
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.923
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.923
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.923
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.921
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.921
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.921
MDP0000156139 Malus domestica MDP0000156139 I 0.921
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.919
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.918
Pm022572 Prunus mume Pm022572 I 0.918
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.917
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.917
PK26613.1 Cannabis sativa PK26613.1 I 0.917
Bo2g091240 Brassica oleracea Bo2g091240 I 0.916
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.916
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.915
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.915
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.914
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.914
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.914
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.914
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.914
MDP0000451107 Malus domestica MDP0000451107 I 0.914
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.913
Bo8g027460 Brassica oleracea Bo8g027460 I 0.911
Bra036731 Brassica rapa Bra036731 I 0.911
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.911
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.908
Bra008285 Brassica rapa Bra008285 I 0.907
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.907
Ca_04385 Cicer arietinum Ca_04385 I 0.907
29576.m000223 Ricinus communis 29576.m000223 I 0.906
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.905
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.905
OB02G33250 Oryza brachyantha OB02G33250 I 0.903
TCM_035565 Theobroma cacao TCM_035565 I 0.900
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.899
Bo6g083690 Brassica oleracea Bo6g083690 I 0.899
Bo6g120870 Brassica oleracea Bo6g120870 I 0.899
Bra003703 Brassica rapa Bra003703 I 0.899
Bra015716 Brassica rapa Bra015716 I 0.899
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.899
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.899
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.899
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.899
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.899
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.899
Ca_25135 Cicer arietinum Ca_25135 I 0.899
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.899
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.899
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.899
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.899
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.899
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.898
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.898
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.898
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.898
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.897
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.897
Ca_04386 Cicer arietinum Ca_04386 I 0.897
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.897
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.897
Cla001992 Citrullus lanatus Cla001992 I 0.896
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.896
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.896
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.895
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.895
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.895
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.895
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.895
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.895
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.895
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.894
TCM_035571 Theobroma cacao TCM_035571 I 0.894
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.893
Si034382m.g Setaria italica Si034382m.g I 0.893
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.893
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.893
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.892
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.892
OBART02G25970 Oryza barthii OBART02G25970 I 0.891
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.891
OB04G27270 Oryza brachyantha OB04G27270 I 0.890
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.890
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.889
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.889
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.889
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.888
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.887
Cla005046 Citrullus lanatus Cla005046 I 0.887
mgf015314m Mimulus guttatus mgf015314m N 0.887
mgf021983m Mimulus guttatus mgf021983m I 0.887
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.887
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.886
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.886
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.886
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.886
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.886
Pm024289 Prunus mume Pm024289 I 0.886
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.886
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.885
Bra003702 Brassica rapa Bra003702 I 0.885
OBART04G20290 Oryza barthii OBART04G20290 I 0.885
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.885
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.885
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.885
Si016578m.g Setaria italica Si016578m.g I 0.885
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.885
mgf018892m Mimulus guttatus mgf018892m N 0.883
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.881
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.881
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.880
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.880
Si012121m.g Setaria italica Si012121m.g I 0.880
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.880
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.880
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.880
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.880
Bo6g049430 Brassica oleracea Bo6g049430 I 0.879
Bra040010 Brassica rapa Bra040010 I 0.879
F775_26337 Aegilops tauschii F775_26337 I 0.879
TCM_015563 Theobroma cacao TCM_015563 I 0.879
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.879
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.879
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.878
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.878
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.878
MDP0000451038 Malus domestica MDP0000451038 I 0.878
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.877
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.877
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.877
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.876
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.876
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.876
PK24122.1 Cannabis sativa PK24122.1 I 0.876
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.874
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.874
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.873
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.873
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.872
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.872
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.871
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.870
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.869
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.869
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.869
MDP0000701272 Malus domestica MDP0000701272 I 0.869
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.869
30068.m002635 Ricinus communis 30068.m002635 I 0.868
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.867
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.866
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.866
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.866
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.866
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.866
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.864
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.863
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.861
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.858
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.856
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.855
mgf004276m Mimulus guttatus mgf004276m I 0.854
Pm001889 Prunus mume Pm001889 I 0.852
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.850
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.847
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.845
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.834
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.831
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.828
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.828
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.828
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.828
F775_24861 Aegilops tauschii F775_24861 N 0.818
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.816