Sb06g023980 (Sorghum bicolor)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Sb06g023980 T249774_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.913 0.774
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.913 0.774
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb06g023980.1 MADF 119 190
Sb06g023980.1 MADF 529 599

Links

Other MADF family TFs
Other Sorghum bicolor TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.971
Si012121m.g Setaria italica Si012121m.g I 0.969
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.965
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.965
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.965
OBART04G20290 Oryza barthii OBART04G20290 I 0.964
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.964
OB04G27270 Oryza brachyantha OB04G27270 I 0.964
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.964
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.964
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.964
Pm024289 Prunus mume Pm024289 I 0.963
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.963
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.963
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.963
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.962
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.961
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.959
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.959
Si034382m.g Setaria italica Si034382m.g I 0.959
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.958
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.958
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.958
MDP0000451038 Malus domestica MDP0000451038 I 0.957
TCM_015563 Theobroma cacao TCM_015563 I 0.957
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.956
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.956
MDP0000701272 Malus domestica MDP0000701272 I 0.955
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.953
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.953
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.953
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.953
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.952
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.952
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.952
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.952
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.952
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.952
F775_26337 Aegilops tauschii F775_26337 I 0.952
30068.m002635 Ricinus communis 30068.m002635 I 0.952
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.952
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.951
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.949
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.949
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.948
Cla005046 Citrullus lanatus Cla005046 I 0.947
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.946
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.946
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.946
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.945
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.944
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.944
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.944
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.944
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.944
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.944
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.942
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.941
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.941
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.940
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.940
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.939
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.939
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.937
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.937
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.934
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.932
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.932
OB02G33250 Oryza brachyantha OB02G33250 I 0.930
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.928
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.927
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.927
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.927
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.927
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.927
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.927
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.923
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.922
OBART02G25970 Oryza barthii OBART02G25970 I 0.920
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.920
Bra040010 Brassica rapa Bra040010 I 0.919
Bo6g049430 Brassica oleracea Bo6g049430 I 0.919
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.919
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.919
mgf004276m Mimulus guttatus mgf004276m I 0.919
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.916
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.916
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.916
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.915
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.913
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.913
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.913
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.910
Si016578m.g Setaria italica Si016578m.g I 0.910
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.910
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.909
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.903
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.903
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.903
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.900
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.900
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.898
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.897
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.897
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.896
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.894
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.893
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.892
Pm022572 Prunus mume Pm022572 I 0.892
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.892
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.891
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.891
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.890
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.890
Pm022570 Prunus mume Pm022570 I 0.890
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.890
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.889
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.889
MDP0000156139 Malus domestica MDP0000156139 I 0.888
PK24122.1 Cannabis sativa PK24122.1 I 0.888
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.887
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.887
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.885
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.885
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.884
MDP0000451107 Malus domestica MDP0000451107 I 0.883
mgf021983m Mimulus guttatus mgf021983m I 0.882
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.882
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.882
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.880
29576.m000223 Ricinus communis 29576.m000223 I 0.879
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.879
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.879
TCM_035565 Theobroma cacao TCM_035565 I 0.879
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.879
Ca_04386 Cicer arietinum Ca_04386 I 0.879
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.879
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.879
Bra008285 Brassica rapa Bra008285 I 0.878
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.878
Bra036731 Brassica rapa Bra036731 I 0.877
Ca_04385 Cicer arietinum Ca_04385 I 0.877
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.876
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.876
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.874
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.874
F775_24861 Aegilops tauschii F775_24861 N 0.874
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.873
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.873
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.873
30206.m000769 Ricinus communis 30206.m000769 I 0.872
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.871
Bo8g027460 Brassica oleracea Bo8g027460 I 0.871
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.871
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.870
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.869
TCM_001348 Theobroma cacao TCM_001348 I 0.867
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.867
Bra003703 Brassica rapa Bra003703 I 0.867
Bra015716 Brassica rapa Bra015716 I 0.867
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.867
Bo6g083690 Brassica oleracea Bo6g083690 I 0.867
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.867
Bo6g120870 Brassica oleracea Bo6g120870 I 0.867
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.867
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.867
TCM_035571 Theobroma cacao TCM_035571 I 0.866
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.866
PK26613.1 Cannabis sativa PK26613.1 I 0.866
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.864
Cla001992 Citrullus lanatus Cla001992 I 0.864
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.863
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.863
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.862
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.862
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.862
Ca_25135 Cicer arietinum Ca_25135 I 0.861
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.857
Cla007910 Citrullus lanatus Cla007910 I 0.857
Bo2g091240 Brassica oleracea Bo2g091240 I 0.856
mgf018892m Mimulus guttatus mgf018892m N 0.856
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.850
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.849
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.849
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.838
Pm001889 Prunus mume Pm001889 I 0.837
Bra003702 Brassica rapa Bra003702 I 0.836
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.818
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.818
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.813