30068.m002635 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 30068.m002635 T250449_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.898 0.791
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.898 0.791
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30068.m002635 MADF 95 166
30068.m002635 MADF 488 557

Links

Other MADF family TFs
Other Ricinus communis TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_015563 Theobroma cacao TCM_015563 I 0.968
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.965
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.964
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.964
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.964
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.963
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.963
Pm024289 Prunus mume Pm024289 I 0.963
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.960
MDP0000451038 Malus domestica MDP0000451038 I 0.960
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.959
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.959
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.959
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.958
Si012121m.g Setaria italica Si012121m.g I 0.957
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.957
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.954
OB04G27270 Oryza brachyantha OB04G27270 I 0.953
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.953
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.952
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.952
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.952
Cla005046 Citrullus lanatus Cla005046 I 0.952
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.952
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.952
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.952
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.951
OBART04G20290 Oryza barthii OBART04G20290 I 0.951
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.951
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.951
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.951
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.949
F775_26337 Aegilops tauschii F775_26337 I 0.948
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.948
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.948
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.947
MDP0000701272 Malus domestica MDP0000701272 I 0.947
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.946
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.946
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.946
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.945
Si034382m.g Setaria italica Si034382m.g I 0.944
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.943
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.942
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.942
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.941
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.941
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.941
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.941
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.941
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.938
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.938
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.938
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.938
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.938
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.938
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.937
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.937
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.933
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.933
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.932
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.932
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.930
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.930
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.928
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.927
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.922
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.922
OB02G33250 Oryza brachyantha OB02G33250 I 0.921
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.918
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.918
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.918
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.918
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.918
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.914
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.913
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.912
OBART02G25970 Oryza barthii OBART02G25970 I 0.911
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.911
mgf004276m Mimulus guttatus mgf004276m I 0.910
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.909
Si016578m.g Setaria italica Si016578m.g I 0.909
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.906
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.906
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.905
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.905
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.904
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.903
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.902
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.902
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.901
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.901
Bo6g049430 Brassica oleracea Bo6g049430 I 0.900
Bra040010 Brassica rapa Bra040010 I 0.900
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.900
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.899
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.899
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.898
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.898
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.898
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.897
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.895
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.893
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.893
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.892
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.891
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.891
MDP0000156139 Malus domestica MDP0000156139 I 0.890
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.888
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.888
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.888
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.887
TCM_035565 Theobroma cacao TCM_035565 I 0.887
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.886
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.886
Pm022572 Prunus mume Pm022572 I 0.886
MDP0000451107 Malus domestica MDP0000451107 I 0.886
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.885
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.884
TCM_001348 Theobroma cacao TCM_001348 I 0.882
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.881
PK24122.1 Cannabis sativa PK24122.1 I 0.881
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.880
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.878
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.878
Pm022570 Prunus mume Pm022570 I 0.877
29576.m000223 Ricinus communis 29576.m000223 I 0.877
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.877
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.877
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.877
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.876
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.874
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.874
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.873
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.873
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.872
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.871
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.871
Ca_04386 Cicer arietinum Ca_04386 I 0.871
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.869
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.869
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.868
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.868
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.868
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.868
Bo6g083690 Brassica oleracea Bo6g083690 I 0.866
Bra003703 Brassica rapa Bra003703 I 0.866
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.866
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.866
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.866
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.866
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.866
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.866
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.866
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.866
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.865
TCM_035571 Theobroma cacao TCM_035571 I 0.864
Ca_25135 Cicer arietinum Ca_25135 I 0.863
Cla001992 Citrullus lanatus Cla001992 I 0.861
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.861
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.860
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.859
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.859
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.859
mgf018892m Mimulus guttatus mgf018892m N 0.859
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.858
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.858
30206.m000769 Ricinus communis 30206.m000769 I 0.857
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.856
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.855
Bo6g120870 Brassica oleracea Bo6g120870 I 0.854
Bra008285 Brassica rapa Bra008285 I 0.854
Bra015716 Brassica rapa Bra015716 I 0.854
Bo8g027460 Brassica oleracea Bo8g027460 I 0.849
Bra036731 Brassica rapa Bra036731 I 0.849
F775_24861 Aegilops tauschii F775_24861 N 0.849
Cla007910 Citrullus lanatus Cla007910 I 0.849
Pm001889 Prunus mume Pm001889 I 0.847
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.847
Bo2g091240 Brassica oleracea Bo2g091240 I 0.846
mgf021983m Mimulus guttatus mgf021983m I 0.846
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.841
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.840
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.833
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.833
PK26613.1 Cannabis sativa PK26613.1 I 0.829
Bra003702 Brassica rapa Bra003702 I 0.826
Ca_04385 Cicer arietinum Ca_04385 I 0.826
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.815
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.815