Si016578m.g (Setaria italica)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Si016578m.g T249817_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.879 0.669
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.879 0.669
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si016578m MADF 108 179
Si016578m MADF 416 497
Si016720m MADF 108 179
Si016720m MADF 416 497

Links

Other MADF family TFs
Other Setaria italica TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.960
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.958
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.954
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.952
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.936
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.918
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.918
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.918
Si034382m.g Setaria italica Si034382m.g I 0.914
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.913
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.912
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.912
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.911
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.911
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.910
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.910
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.909
30068.m002635 Ricinus communis 30068.m002635 I 0.909
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.908
OB02G33250 Oryza brachyantha OB02G33250 I 0.907
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.906
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.906
Pm024289 Prunus mume Pm024289 I 0.906
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.906
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.905
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.903
OBART02G25970 Oryza barthii OBART02G25970 I 0.903
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.903
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.903
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.903
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.903
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.903
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.902
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.902
Si012121m.g Setaria italica Si012121m.g I 0.902
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.902
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.902
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.902
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.902
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.901
TCM_015563 Theobroma cacao TCM_015563 I 0.901
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.901
MDP0000701272 Malus domestica MDP0000701272 I 0.901
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.900
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.899
MDP0000451038 Malus domestica MDP0000451038 I 0.899
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.898
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.898
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.898
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.898
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.898
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.898
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.898
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.898
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.897
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.896
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.895
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.895
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.894
F775_26337 Aegilops tauschii F775_26337 I 0.893
OB04G27270 Oryza brachyantha OB04G27270 I 0.893
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.893
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.893
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.893
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.893
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.893
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.893
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.892
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.890
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.890
Cla005046 Citrullus lanatus Cla005046 I 0.890
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.890
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.890
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.890
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.889
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.889
OBART04G20290 Oryza barthii OBART04G20290 I 0.889
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.889
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.889
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.889
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.889
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.889
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.888
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.888
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.886
Pm022570 Prunus mume Pm022570 I 0.885
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.885
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.885
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.885
Bo6g049430 Brassica oleracea Bo6g049430 I 0.883
Bra040010 Brassica rapa Bra040010 I 0.883
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.883
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.883
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.882
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.881
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.880
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.879
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.879
29576.m000223 Ricinus communis 29576.m000223 I 0.879
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.877
mgf004276m Mimulus guttatus mgf004276m I 0.877
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.877
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.872
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.872
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.871
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.869
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.869
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.866
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.866
TCM_035571 Theobroma cacao TCM_035571 I 0.865
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.864
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.864
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.863
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.862
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.862
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.861
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.861
MDP0000156139 Malus domestica MDP0000156139 I 0.860
PK24122.1 Cannabis sativa PK24122.1 I 0.860
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.859
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.859
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.857
Cla007910 Citrullus lanatus Cla007910 I 0.857
Pm022572 Prunus mume Pm022572 I 0.857
30206.m000769 Ricinus communis 30206.m000769 I 0.857
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.857
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.857
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.857
TCM_001348 Theobroma cacao TCM_001348 I 0.856
Ca_04385 Cicer arietinum Ca_04385 I 0.856
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.856
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.856
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.856
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.856
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.855
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.855
TCM_035565 Theobroma cacao TCM_035565 I 0.855
MDP0000451107 Malus domestica MDP0000451107 I 0.855
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.854
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.854
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.853
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.852
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.852
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.852
PK26613.1 Cannabis sativa PK26613.1 I 0.852
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.850
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.848
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.847
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.845
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.843
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.843
Bra008285 Brassica rapa Bra008285 I 0.840
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.840
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.837
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.837
Cla001992 Citrullus lanatus Cla001992 I 0.837
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.837
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.837
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.836
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.836
Ca_04386 Cicer arietinum Ca_04386 I 0.833
mgf018892m Mimulus guttatus mgf018892m N 0.833
Bo8g027460 Brassica oleracea Bo8g027460 I 0.832
Bra036731 Brassica rapa Bra036731 I 0.832
mgf021983m Mimulus guttatus mgf021983m I 0.832
Bo6g083690 Brassica oleracea Bo6g083690 I 0.827
Bo6g120870 Brassica oleracea Bo6g120870 I 0.827
Bra003703 Brassica rapa Bra003703 I 0.827
Bra015716 Brassica rapa Bra015716 I 0.827
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.827
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.827
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.827
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.827
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.827
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.827
Bo2g091240 Brassica oleracea Bo2g091240 I 0.826
F775_24861 Aegilops tauschii F775_24861 N 0.825
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.824
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.824
Ca_25135 Cicer arietinum Ca_25135 I 0.823
Bra003702 Brassica rapa Bra003702 I 0.822
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.822
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.822
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.819
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.818
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.817